Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 AP002472.1-201ENST00000577490 586 ntBASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 HLA-A-201ENST00000376802 1334 ntBASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 AL691432.1-201ENST00000596308 1422 ntBASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 FOXO1B-201ENST00000504678 1527 ntBASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMA1Q9UHB6 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 AC098859.1-201ENST00000502915 1238 ntBASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 AL662844.1-201ENST00000546340 181 ntBASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 MIR4313-201ENST00000580760 101 ntBASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 AC068137.2-201ENST00000605408 478 ntBASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 BNIP3P1-202ENST00000550043 1585 ntBASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMA1Q9UHB6 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AC009090.5-201ENST00000624886 2285 ntBASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms