Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL21A1Q96P44 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL21A1Q96P44 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL21A1Q96P44 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 HTR5BP-201ENST00000430851 1154 ntBASIC15.3■□□□□ 0.04
COL21A1Q96P44 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 MKNK2P1-201ENST00000437526 628 ntBASIC15.3■□□□□ 0.04
COL21A1Q96P44 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 AC005829.1-201ENST00000570002 483 ntBASIC15.3■□□□□ 0.04
COL21A1Q96P44 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL21A1Q96P44 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.3■□□□□ 0.04
COL21A1Q96P44 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AC022532.1-201ENST00000624563 1728 ntBASIC15.29■□□□□ 0.04
COL21A1Q96P44 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AC010327.4-202ENST00000591484 748 ntBASIC15.29■□□□□ 0.04
COL21A1Q96P44 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 AC092902.6-201ENST00000641783 218 ntBASIC15.29■□□□□ 0.04
COL21A1Q96P44 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL21A1Q96P44 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.29■□□□□ 0.04
COL21A1Q96P44 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms