Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 LINC00552-201ENST00000625151 2579 ntBASIC13.92□□□□□ -0.18
CMTM3Q96MX0 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.92□□□□□ -0.18
CMTM3Q96MX0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 PTCHD3P3-201ENST00000403073 906 ntBASIC13.91□□□□□ -0.18
CMTM3Q96MX0 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 AC139887.3-201ENST00000568585 713 ntBASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 AC091076.1-201ENST00000610741 619 ntBASIC13.91□□□□□ -0.18
CMTM3Q96MX0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.91□□□□□ -0.18
CMTM3Q96MX0 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.91□□□□□ -0.18
CMTM3Q96MX0 AP003680.1-201ENST00000598970 3660 ntBASIC13.91□□□□□ -0.18
CMTM3Q96MX0 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 AC091951.1-201ENST00000512854 2465 ntBASIC13.9□□□□□ -0.18
CMTM3Q96MX0 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 AC005521.1-201ENST00000393351 872 ntBASIC13.9□□□□□ -0.18
CMTM3Q96MX0 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 BX005266.1-201ENST00000473402 457 ntBASIC13.9□□□□□ -0.18
CMTM3Q96MX0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.9□□□□□ -0.18
CMTM3Q96MX0 AC092329.2-201ENST00000598402 547 ntBASIC13.9□□□□□ -0.18
CMTM3Q96MX0 AC012306.2-201ENST00000609350 630 ntBASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms