Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 CLK3P2-201ENST00000427566 1453 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC026471.1-201ENST00000564629 3026 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 ALOX12P2-203ENST00000570921 1945 ntBASIC15.64■□□□□ 0.09
LMX1AQ8TE12 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 RARRES2P5-201ENST00000564013 466 ntBASIC15.64■□□□□ 0.09
LMX1AQ8TE12 RRP7BP-205ENST00000566851 833 ntBASIC15.64■□□□□ 0.09
LMX1AQ8TE12 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 LINC01115-203ENST00000606068 577 ntBASIC15.64■□□□□ 0.09
LMX1AQ8TE12 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LMX1AQ8TE12 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 TTTY23B-201ENST00000442790 549 ntBASIC15.63■□□□□ 0.09
LMX1AQ8TE12 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LMX1AQ8TE12 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms