Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CHD9Q3L8U1 MAGEA5-201ENST00000446757 942 ntBASIC16.71■□□□□ 0.27
CHD9Q3L8U1 PRKXP1-201ENST00000561423 1122 ntBASIC16.71■□□□□ 0.27
CHD9Q3L8U1 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHD9Q3L8U1 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CHD9Q3L8U1 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CHD9Q3L8U1 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.71■□□□□ 0.26
CHD9Q3L8U1 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
CHD9Q3L8U1 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 MIR6756-201ENST00000616240 63 ntBASIC16.7■□□□□ 0.26
CHD9Q3L8U1 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 MIR769-201ENST00000390225 118 ntBASIC16.7■□□□□ 0.26
CHD9Q3L8U1 ACTG1P2-201ENST00000415776 1125 ntBASIC16.7■□□□□ 0.26
CHD9Q3L8U1 ACTG1P11-201ENST00000425411 1125 ntBASIC16.7■□□□□ 0.26
CHD9Q3L8U1 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 AC078925.2-201ENST00000624013 1973 ntBASIC16.7■□□□□ 0.26
CHD9Q3L8U1 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHD9Q3L8U1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 AP001094.4-201ENST00000579008 2176 ntBASIC16.69■□□□□ 0.26
CHD9Q3L8U1 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 RPL13AP19-201ENST00000434320 584 ntBASIC16.69■□□□□ 0.26
CHD9Q3L8U1 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 EEF1DP6-201ENST00000449232 372 ntBASIC16.69■□□□□ 0.26
CHD9Q3L8U1 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CHD9Q3L8U1 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms