Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.12■□□□□ 0.33
SOX4Q06945 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.12■□□□□ 0.33
SOX4Q06945 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.12■□□□□ 0.33
SOX4Q06945 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 MEIS3P1-201ENST00000495167 958 ntBASIC17.12■□□□□ 0.33
SOX4Q06945 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.12■□□□□ 0.33
SOX4Q06945 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.12■□□□□ 0.33
SOX4Q06945 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SOX4Q06945 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.12■□□□□ 0.33
SOX4Q06945 AL391069.4-201ENST00000609583 481 ntBASIC17.12■□□□□ 0.33
SOX4Q06945 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.12■□□□□ 0.33
SOX4Q06945 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX4Q06945 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX4Q06945 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 AC063926.2-201ENST00000623766 1308 ntBASIC17.12■□□□□ 0.33
SOX4Q06945 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX4Q06945 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SOX4Q06945 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.12■□□□□ 0.33
SOX4Q06945 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX4Q06945 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SOX4Q06945 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SOX4Q06945 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX4Q06945 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 AC087499.6-201ENST00000411576 835 ntBASIC17.11■□□□□ 0.33
SOX4Q06945 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.11■□□□□ 0.33
SOX4Q06945 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 TIMM17BP1-201ENST00000545713 516 ntBASIC17.11■□□□□ 0.33
SOX4Q06945 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.11■□□□□ 0.33
SOX4Q06945 AC097359.3-201ENST00000603982 1210 ntBASIC17.11■□□□□ 0.33
SOX4Q06945 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.11■□□□□ 0.33
SOX4Q06945 MIR8072-201ENST00000614241 80 ntBASIC17.11■□□□□ 0.33
SOX4Q06945 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SOX4Q06945 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX4Q06945 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SOX4Q06945 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX4Q06945 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX4Q06945 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SOX4Q06945 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX4Q06945 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX4Q06945 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
SOX4Q06945 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX4Q06945 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX4Q06945 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.1■□□□□ 0.33
SOX4Q06945 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.1■□□□□ 0.33
SOX4Q06945 AL450472.2-201ENST00000603663 1156 ntBASIC17.1■□□□□ 0.33
SOX4Q06945 AC099568.2-201ENST00000609194 695 ntBASIC17.1■□□□□ 0.33
SOX4Q06945 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SOX4Q06945 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX4Q06945 AL358472.5-202ENST00000641448 1267 ntBASIC17.1■□□□□ 0.33
SOX4Q06945 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX4Q06945 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SOX4Q06945 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX4Q06945 AC138969.3-201ENST00000546612 1459 ntBASIC17.1■□□□□ 0.33
SOX4Q06945 AC138932.2-201ENST00000548268 1459 ntBASIC17.1■□□□□ 0.33
SOX4Q06945 AC126755.4-201ENST00000549796 1459 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms