Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HDAC4P56524 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 HAUS4P1-201ENST00000406739 1145 ntBASIC16.88■□□□□ 0.29
HDAC4P56524 AC254562.1-201ENST00000417586 456 ntBASIC16.88■□□□□ 0.29
HDAC4P56524 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.88■□□□□ 0.29
HDAC4P56524 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.88■□□□□ 0.29
HDAC4P56524 RNA5SP410-201ENST00000516285 106 ntBASIC16.88■□□□□ 0.29
HDAC4P56524 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HDAC4P56524 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HDAC4P56524 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.88■□□□□ 0.29
HDAC4P56524 AC024267.1-201ENST00000582320 895 ntBASIC16.88■□□□□ 0.29
HDAC4P56524 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.88■□□□□ 0.29
HDAC4P56524 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.88■□□□□ 0.29
HDAC4P56524 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.88■□□□□ 0.29
HDAC4P56524 AC022188.1-201ENST00000620960 1664 ntBASIC16.88■□□□□ 0.29
HDAC4P56524 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.87■□□□□ 0.29
HDAC4P56524 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HDAC4P56524 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HDAC4P56524 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HDAC4P56524 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.87■□□□□ 0.29
HDAC4P56524 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.87■□□□□ 0.29
HDAC4P56524 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 MIR1233-2-201ENST00000408138 82 ntBASIC16.87■□□□□ 0.29
HDAC4P56524 MIR1233-1-201ENST00000408722 82 ntBASIC16.87■□□□□ 0.29
HDAC4P56524 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.87■□□□□ 0.29
HDAC4P56524 RARRES2P9-201ENST00000565168 469 ntBASIC16.87■□□□□ 0.29
HDAC4P56524 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.87■□□□□ 0.29
HDAC4P56524 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.87■□□□□ 0.29
HDAC4P56524 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.87■□□□□ 0.29
HDAC4P56524 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.87■□□□□ 0.29
HDAC4P56524 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDAC4P56524 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HDAC4P56524 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.87■□□□□ 0.29
HDAC4P56524 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.87■□□□□ 0.29
HDAC4P56524 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 AC092850.2-201ENST00000623821 2697 ntBASIC16.86■□□□□ 0.29
HDAC4P56524 AC007950.2-201ENST00000615045 2347 ntBASIC16.86■□□□□ 0.29
HDAC4P56524 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.86■□□□□ 0.29
HDAC4P56524 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
HDAC4P56524 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.86■□□□□ 0.29
HDAC4P56524 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HDAC4P56524 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.86■□□□□ 0.29
HDAC4P56524 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 CNN2P11-201ENST00000429351 262 ntBASIC16.86■□□□□ 0.29
HDAC4P56524 DNAJB3-202ENST00000449667 1266 ntBASIC16.86■□□□□ 0.29
HDAC4P56524 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.86■□□□□ 0.29
HDAC4P56524 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.86■□□□□ 0.29
HDAC4P56524 ALG1L8P-201ENST00000533887 760 ntBASIC16.86■□□□□ 0.29
HDAC4P56524 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.86■□□□□ 0.29
HDAC4P56524 AC027612.4-201ENST00000605371 583 ntBASIC16.86■□□□□ 0.29
HDAC4P56524 AC009093.7-201ENST00000623853 1223 ntBASIC16.86■□□□□ 0.29
HDAC4P56524 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HDAC4P56524 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDAC4P56524 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms