Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CTCFP49711 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.58■□□□□ 0.56
CTCFP49711 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CTCFP49711 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.57■□□□□ 0.56
CTCFP49711 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.57■□□□□ 0.56
CTCFP49711 RPL13AP19-201ENST00000434320 584 ntBASIC18.57■□□□□ 0.56
CTCFP49711 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC18.57■□□□□ 0.56
CTCFP49711 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.57■□□□□ 0.56
CTCFP49711 FAM86LP-201ENST00000478302 853 ntBASIC18.57■□□□□ 0.56
CTCFP49711 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 FGFR3P5-201ENST00000564496 886 ntBASIC18.57■□□□□ 0.56
CTCFP49711 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.57■□□□□ 0.56
CTCFP49711 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.57■□□□□ 0.56
CTCFP49711 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC18.57■□□□□ 0.56
CTCFP49711 AL451050.2-201ENST00000606967 682 ntBASIC18.57■□□□□ 0.56
CTCFP49711 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CTCFP49711 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.57■□□□□ 0.56
CTCFP49711 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CTCFP49711 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTCFP49711 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.56■□□□□ 0.56
CTCFP49711 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CTCFP49711 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC18.56■□□□□ 0.56
CTCFP49711 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CTCFP49711 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CTCFP49711 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC18.56■□□□□ 0.56
CTCFP49711 AL139010.1-201ENST00000454878 894 ntBASIC18.56■□□□□ 0.56
CTCFP49711 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CTCFP49711 CLUHP6-201ENST00000580789 941 ntBASIC18.56■□□□□ 0.56
CTCFP49711 AC061975.2-201ENST00000581722 295 ntBASIC18.56■□□□□ 0.56
CTCFP49711 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.56■□□□□ 0.56
CTCFP49711 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.56■□□□□ 0.56
CTCFP49711 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTCFP49711 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.56■□□□□ 0.56
CTCFP49711 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.56■□□□□ 0.56
CTCFP49711 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.56■□□□□ 0.56
CTCFP49711 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
CTCFP49711 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
CTCFP49711 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
CTCFP49711 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 RPSAP36-202ENST00000494591 1261 ntBASIC18.55■□□□□ 0.56
CTCFP49711 SUPT4H1P2-201ENST00000501248 353 ntBASIC18.55■□□□□ 0.56
CTCFP49711 COX5BP1-201ENST00000507622 393 ntBASIC18.55■□□□□ 0.56
CTCFP49711 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.55■□□□□ 0.56
CTCFP49711 ACR-203ENST00000529621 708 ntTSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.55■□□□□ 0.56
CTCFP49711 AP001063.1-201ENST00000568332 529 ntBASIC18.55■□□□□ 0.56
CTCFP49711 NKG7-204ENST00000595217 816 ntTSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 MIR6756-201ENST00000616240 63 ntBASIC18.55■□□□□ 0.56
CTCFP49711 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms