Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
COL8A1P27658 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.05□□□□□ -0.16
COL8A1P27658 NUS1P3-201ENST00000423502 862 ntBASIC14.05□□□□□ -0.16
COL8A1P27658 OLR1-203ENST00000432556 950 ntTSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.05□□□□□ -0.16
COL8A1P27658 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC14.05□□□□□ -0.16
COL8A1P27658 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.05□□□□□ -0.16
COL8A1P27658 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.05□□□□□ -0.16
COL8A1P27658 AC068587.3-201ENST00000526613 355 ntBASIC14.05□□□□□ -0.16
COL8A1P27658 PTP4A1P2-201ENST00000546033 454 ntBASIC14.05□□□□□ -0.16
COL8A1P27658 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.05□□□□□ -0.16
COL8A1P27658 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
COL8A1P27658 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.05□□□□□ -0.16
COL8A1P27658 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.05□□□□□ -0.16
COL8A1P27658 AC005702.4-201ENST00000618393 416 ntBASIC14.05□□□□□ -0.16
COL8A1P27658 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL8A1P27658 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.05□□□□□ -0.16
COL8A1P27658 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC14.05□□□□□ -0.16
COL8A1P27658 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL8A1P27658 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.05□□□□□ -0.16
COL8A1P27658 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL8A1P27658 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
COL8A1P27658 AC138028.4-201ENST00000564984 1845 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.04□□□□□ -0.16
COL8A1P27658 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 AC091046.1-201ENST00000331871 207 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.04□□□□□ -0.16
COL8A1P27658 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.04□□□□□ -0.16
COL8A1P27658 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL8A1P27658 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.04□□□□□ -0.16
COL8A1P27658 AC253536.4-201ENST00000440539 267 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 AC005077.2-201ENST00000449786 690 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.04□□□□□ -0.16
COL8A1P27658 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.04□□□□□ -0.16
COL8A1P27658 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.04□□□□□ -0.16
COL8A1P27658 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.04□□□□□ -0.16
COL8A1P27658 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.04□□□□□ -0.16
COL8A1P27658 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 AC024267.1-201ENST00000582320 895 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL8A1P27658 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
COL8A1P27658 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.04□□□□□ -0.16
COL8A1P27658 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
COL8A1P27658 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.04□□□□□ -0.16
COL8A1P27658 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.04□□□□□ -0.16
COL8A1P27658 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
COL8A1P27658 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL8A1P27658 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL8A1P27658 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.03□□□□□ -0.16
COL8A1P27658 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms