Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLED1-202ENST00000512051 380 ntBASIC16.58■□□□□ 0.24
HMGA1P17096 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.58■□□□□ 0.24
HMGA1P17096 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGA1P17096 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.58■□□□□ 0.24
HMGA1P17096 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.58■□□□□ 0.24
HMGA1P17096 AL162274.1-201ENST00000617191 1098 ntBASIC16.58■□□□□ 0.24
HMGA1P17096 RPSAP52-203ENST00000622976 1023 ntBASIC16.58■□□□□ 0.24
HMGA1P17096 AL033527.5-201ENST00000641382 801 ntBASIC16.58■□□□□ 0.24
HMGA1P17096 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGA1P17096 AL607033.1-201ENST00000623900 1599 ntBASIC16.58■□□□□ 0.24
HMGA1P17096 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HMGA1P17096 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGA1P17096 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HMGA1P17096 AL596087.1-201ENST00000400979 1969 ntBASIC16.58■□□□□ 0.24
HMGA1P17096 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGA1P17096 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGA1P17096 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HMGA1P17096 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.58■□□□□ 0.24
HMGA1P17096 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HMGA1P17096 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGA1P17096 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGA1P17096 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
HMGA1P17096 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGA1P17096 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HMGA1P17096 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGA1P17096 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGA1P17096 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGA1P17096 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGA1P17096 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGA1P17096 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.57■□□□□ 0.24
HMGA1P17096 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGA1P17096 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.57■□□□□ 0.24
HMGA1P17096 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGA1P17096 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.57■□□□□ 0.24
HMGA1P17096 HILS1-202ENST00000545329 423 ntBASIC16.57■□□□□ 0.24
HMGA1P17096 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGA1P17096 AC106886.1-201ENST00000568660 600 ntBASIC16.57■□□□□ 0.24
HMGA1P17096 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGA1P17096 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGA1P17096 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGA1P17096 AL008721.1-201ENST00000609964 604 ntBASIC16.57■□□□□ 0.24
HMGA1P17096 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGA1P17096 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
HMGA1P17096 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 AC079328.2-201ENST00000561241 3354 ntBASIC16.57■□□□□ 0.24
HMGA1P17096 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGA1P17096 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGA1P17096 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HMGA1P17096 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.56■□□□□ 0.24
HMGA1P17096 MTHFR-217ENST00000641820 1569 ntBASIC16.56■□□□□ 0.24
HMGA1P17096 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HMGA1P17096 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HMGA1P17096 TMEM14DP-201ENST00000422205 345 ntBASIC16.56■□□□□ 0.24
HMGA1P17096 TTTY23B-201ENST00000442790 549 ntBASIC16.56■□□□□ 0.24
HMGA1P17096 GPR53P-205ENST00000457298 1084 ntBASIC16.56■□□□□ 0.24
HMGA1P17096 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGA1P17096 FAM86LP-201ENST00000478302 853 ntBASIC16.56■□□□□ 0.24
HMGA1P17096 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.56■□□□□ 0.24
HMGA1P17096 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 BRI3BPP1-201ENST00000594224 787 ntBASIC16.56■□□□□ 0.24
HMGA1P17096 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.56■□□□□ 0.24
HMGA1P17096 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGA1P17096 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGA1P17096 AC011477.6-201ENST00000604980 1927 ntBASIC16.56■□□□□ 0.24
HMGA1P17096 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms