Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS4BO75351 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.88■□□□□ 0.13
VPS4BO75351 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 AL031432.2-201ENST00000566714 459 ntBASIC15.88■□□□□ 0.13
VPS4BO75351 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 AL928711.1-201ENST00000570165 459 ntBASIC15.88■□□□□ 0.13
VPS4BO75351 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS4BO75351 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 AC012569.1-201ENST00000591191 1524 ntBASIC15.88■□□□□ 0.13
VPS4BO75351 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS4BO75351 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS4BO75351 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
VPS4BO75351 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 AC067930.6-201ENST00000623257 4947 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
VPS4BO75351 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
VPS4BO75351 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VPS4BO75351 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.87■□□□□ 0.13
VPS4BO75351 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.87■□□□□ 0.13
VPS4BO75351 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.87■□□□□ 0.13
VPS4BO75351 AC190387.1-201ENST00000551683 408 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.87■□□□□ 0.13
VPS4BO75351 PDPK2P-202ENST00000562415 1191 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 AC138761.1-201ENST00000584393 385 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VPS4BO75351 AC008667.4-201ENST00000607370 168 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 AC021097.1-201ENST00000607902 574 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
VPS4BO75351 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
VPS4BO75351 AC004790.2-201ENST00000623588 572 ntBASIC15.87■□□□□ 0.13
VPS4BO75351 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VPS4BO75351 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
VPS4BO75351 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VPS4BO75351 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VPS4BO75351 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS4BO75351 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS4BO75351 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
VPS4BO75351 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS4BO75351 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms