Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CHMP4AQ9BY43 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CHMP4AQ9BY43 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.52■□□□□ 0.87
CHMP4AQ9BY43 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CHMP4AQ9BY43 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 KLK8-202ENST00000320838 456 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 AC135586.1-201ENST00000539323 574 ntBASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4AQ9BY43 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AL391825.1-201ENST00000457671 1364 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 PIN1P1-201ENST00000412108 996 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 UGT1A2P-201ENST00000454886 866 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 TIMM17BP1-201ENST00000545713 516 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AC025048.3-201ENST00000590609 569 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AC027307.3-201ENST00000594262 1100 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AC005702.4-201ENST00000618393 416 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AL596087.1-201ENST00000400979 1969 ntBASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4AQ9BY43 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms