Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.38■□□□□ 0.53
ERCC4Q92889 AC098831.1-202ENST00000438821 336 ntBASIC18.38■□□□□ 0.53
ERCC4Q92889 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.38■□□□□ 0.53
ERCC4Q92889 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
ERCC4Q92889 RN7SL510P-201ENST00000581311 263 ntBASIC18.38■□□□□ 0.53
ERCC4Q92889 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.38■□□□□ 0.53
ERCC4Q92889 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.38■□□□□ 0.53
ERCC4Q92889 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.38■□□□□ 0.53
ERCC4Q92889 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
ERCC4Q92889 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.38■□□□□ 0.53
ERCC4Q92889 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ERCC4Q92889 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.38■□□□□ 0.53
ERCC4Q92889 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ERCC4Q92889 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.37■□□□□ 0.53
ERCC4Q92889 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ERCC4Q92889 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.37■□□□□ 0.53
ERCC4Q92889 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.37■□□□□ 0.53
ERCC4Q92889 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.37■□□□□ 0.53
ERCC4Q92889 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.37■□□□□ 0.53
ERCC4Q92889 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
ERCC4Q92889 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.37■□□□□ 0.53
ERCC4Q92889 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ERCC4Q92889 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.37■□□□□ 0.53
ERCC4Q92889 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 AC067930.6-201ENST00000623257 4947 ntBASIC18.36■□□□□ 0.53
ERCC4Q92889 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ERCC4Q92889 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
ERCC4Q92889 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ERCC4Q92889 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ERCC4Q92889 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ERCC4Q92889 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 MRPL3P1-201ENST00000400109 1033 ntBASIC18.36■□□□□ 0.53
ERCC4Q92889 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ERCC4Q92889 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
ERCC4Q92889 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.36■□□□□ 0.53
ERCC4Q92889 AC008677.1-201ENST00000519230 1561 ntBASIC18.36■□□□□ 0.53
ERCC4Q92889 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
ERCC4Q92889 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ERCC4Q92889 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.36■□□□□ 0.53
ERCC4Q92889 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.36■□□□□ 0.53
ERCC4Q92889 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 AC092919.2-201ENST00000623631 1645 ntBASIC18.36■□□□□ 0.53
ERCC4Q92889 AC116407.3-201ENST00000623905 1129 ntBASIC18.36■□□□□ 0.53
ERCC4Q92889 PGM5P2-202ENST00000637225 1043 ntBASIC18.36■□□□□ 0.53
ERCC4Q92889 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.36■□□□□ 0.53
ERCC4Q92889 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
ERCC4Q92889 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.36■□□□□ 0.53
ERCC4Q92889 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ERCC4Q92889 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms