Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 MFF-204ENST00000353339 2186 ntTSL 5 BASIC21.01■□□□□ 0.95
USP54Q70EL1 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
USP54Q70EL1 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
USP54Q70EL1 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 AC006001.1-201ENST00000325130 474 ntBASIC21.01■□□□□ 0.95
USP54Q70EL1 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC21.01■□□□□ 0.95
USP54Q70EL1 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
USP54Q70EL1 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC21.01■□□□□ 0.95
USP54Q70EL1 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC21.01■□□□□ 0.95
USP54Q70EL1 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC21.01■□□□□ 0.95
USP54Q70EL1 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
USP54Q70EL1 SP100-205ENST00000409824 1802 ntTSL 5 BASIC21.01■□□□□ 0.95
USP54Q70EL1 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP54Q70EL1 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC21■□□□□ 0.95
USP54Q70EL1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
USP54Q70EL1 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP54Q70EL1 AC104457.1-201ENST00000401024 814 ntBASIC21■□□□□ 0.95
USP54Q70EL1 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC21■□□□□ 0.95
USP54Q70EL1 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC21■□□□□ 0.95
USP54Q70EL1 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC21■□□□□ 0.95
USP54Q70EL1 KRT18P25-201ENST00000508931 1278 ntBASIC21■□□□□ 0.95
USP54Q70EL1 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC21■□□□□ 0.95
USP54Q70EL1 RN7SL219P-201ENST00000582872 296 ntBASIC21■□□□□ 0.95
USP54Q70EL1 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC21■□□□□ 0.95
USP54Q70EL1 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC21■□□□□ 0.95
USP54Q70EL1 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC21■□□□□ 0.95
USP54Q70EL1 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USP54Q70EL1 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP54Q70EL1 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
USP54Q70EL1 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21■□□□□ 0.95
USP54Q70EL1 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
USP54Q70EL1 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
USP54Q70EL1 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC20.99■□□□□ 0.95
USP54Q70EL1 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.99■□□□□ 0.95
USP54Q70EL1 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
USP54Q70EL1 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 HNRNPA1P48-202ENST00000565308 961 ntBASIC20.99■□□□□ 0.95
USP54Q70EL1 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC20.99■□□□□ 0.95
USP54Q70EL1 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.99■□□□□ 0.95
USP54Q70EL1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
USP54Q70EL1 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.99■□□□□ 0.95
USP54Q70EL1 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.99■□□□□ 0.95
USP54Q70EL1 FAM197Y7-201ENST00000432892 766 ntBASIC20.99■□□□□ 0.95
USP54Q70EL1 C2orf27AP3-201ENST00000434123 579 ntBASIC20.99■□□□□ 0.95
USP54Q70EL1 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP54Q70EL1 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.99■□□□□ 0.95
USP54Q70EL1 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.99■□□□□ 0.95
USP54Q70EL1 KC6-205ENST00000599934 556 ntTSL 4 BASIC20.99■□□□□ 0.95
USP54Q70EL1 AL354718.3-201ENST00000616414 581 ntBASIC20.99■□□□□ 0.95
USP54Q70EL1 CR382287.1-201ENST00000623954 586 ntBASIC20.99■□□□□ 0.95
USP54Q70EL1 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC20.99■□□□□ 0.95
USP54Q70EL1 KRT8P35-201ENST00000483942 1338 ntBASIC20.99■□□□□ 0.95
USP54Q70EL1 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC20.98■□□□□ 0.95
USP54Q70EL1 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
USP54Q70EL1 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC20.98■□□□□ 0.95
USP54Q70EL1 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC20.98■□□□□ 0.95
USP54Q70EL1 AC091804.1-201ENST00000486888 567 ntBASIC20.98■□□□□ 0.95
USP54Q70EL1 PFN2-215ENST00000497148 743 ntTSL 4 BASIC20.98■□□□□ 0.95
USP54Q70EL1 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC20.98■□□□□ 0.95
USP54Q70EL1 AP005019.2-201ENST00000615104 511 ntBASIC20.98■□□□□ 0.95
USP54Q70EL1 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP54Q70EL1 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.98■□□□□ 0.95
USP54Q70EL1 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms