Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.43■□□□□ 0.38
KRT39Q6A163 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
KRT39Q6A163 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
KRT39Q6A163 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
KRT39Q6A163 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.43■□□□□ 0.38
KRT39Q6A163 RPS8P6-201ENST00000426177 609 ntBASIC17.43■□□□□ 0.38
KRT39Q6A163 SPDYE14P-201ENST00000442619 822 ntBASIC17.43■□□□□ 0.38
KRT39Q6A163 AL139010.1-201ENST00000454878 894 ntBASIC17.43■□□□□ 0.38
KRT39Q6A163 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.43■□□□□ 0.38
KRT39Q6A163 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
KRT39Q6A163 AC026150.2-201ENST00000564693 1156 ntBASIC17.43■□□□□ 0.38
KRT39Q6A163 AC018529.1-201ENST00000613063 361 ntBASIC17.43■□□□□ 0.38
KRT39Q6A163 AC079781.4-201ENST00000641908 219 ntBASIC17.43■□□□□ 0.38
KRT39Q6A163 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.43■□□□□ 0.38
KRT39Q6A163 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.43■□□□□ 0.38
KRT39Q6A163 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
KRT39Q6A163 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
KRT39Q6A163 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
KRT39Q6A163 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
KRT39Q6A163 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.42■□□□□ 0.38
KRT39Q6A163 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.42■□□□□ 0.38
KRT39Q6A163 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.42■□□□□ 0.38
KRT39Q6A163 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.42■□□□□ 0.38
KRT39Q6A163 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.42■□□□□ 0.38
KRT39Q6A163 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
KRT39Q6A163 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.42■□□□□ 0.38
KRT39Q6A163 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.42■□□□□ 0.38
KRT39Q6A163 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.42■□□□□ 0.38
KRT39Q6A163 AC027612.4-201ENST00000605371 583 ntBASIC17.42■□□□□ 0.38
KRT39Q6A163 AC026979.3-201ENST00000607315 403 ntBASIC17.42■□□□□ 0.38
KRT39Q6A163 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.42■□□□□ 0.38
KRT39Q6A163 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 AP005117.1-202ENST00000581724 1908 ntBASIC17.42■□□□□ 0.38
KRT39Q6A163 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.42■□□□□ 0.38
KRT39Q6A163 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.42■□□□□ 0.38
KRT39Q6A163 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.42■□□□□ 0.38
KRT39Q6A163 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.42■□□□□ 0.38
KRT39Q6A163 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
KRT39Q6A163 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
KRT39Q6A163 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 AL136982.4-201ENST00000437689 1740 ntBASIC17.41■□□□□ 0.38
KRT39Q6A163 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
KRT39Q6A163 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
KRT39Q6A163 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
KRT39Q6A163 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
KRT39Q6A163 AC004987.2-201ENST00000395959 1148 ntBASIC17.41■□□□□ 0.38
KRT39Q6A163 AL353705.2-201ENST00000428243 662 ntBASIC17.41■□□□□ 0.38
KRT39Q6A163 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.41■□□□□ 0.38
KRT39Q6A163 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.41■□□□□ 0.38
KRT39Q6A163 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.41■□□□□ 0.38
KRT39Q6A163 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.41■□□□□ 0.38
KRT39Q6A163 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.41■□□□□ 0.38
KRT39Q6A163 AL691403.2-201ENST00000618460 490 ntBASIC17.41■□□□□ 0.38
KRT39Q6A163 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.41■□□□□ 0.38
KRT39Q6A163 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.41■□□□□ 0.38
KRT39Q6A163 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.41■□□□□ 0.38
KRT39Q6A163 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
KRT39Q6A163 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms