Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL6A5A8TX70 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 TPM3P8-201ENST00000330554 643 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 SLC25A1P3-201ENST00000395415 828 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 AL133267.1-201ENST00000398220 340 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 MPV17-205ENST00000402310 906 ntTSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 RGS5-214ENST00000429865 754 ntTSL 3 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 MIR4754-201ENST00000582477 89 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 AC107373.2-201ENST00000607735 490 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 TUBB8P12-201ENST00000308911 1335 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 TUBB7P-202ENST00000428444 1305 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 TUBB8P7-204ENST00000567960 1332 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 AC133963.1-201ENST00000504166 1679 ntBASIC12.27□□□□□ -0.45
COL6A5A8TX70 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL6A5A8TX70 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
COL6A5A8TX70 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 OARD1-204ENST00000464633 717 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC006158.1-201ENST00000610661 249 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC004923.1-202ENST00000642106 209 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 PCDHB17P-201ENST00000539533 2393 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AL512652.2-201ENST00000625156 1716 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC130709.1-201ENST00000484779 1212 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MARK2P5-201ENST00000507649 634 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 FAM86KP-201ENST00000509817 987 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 RN7SL48P-201ENST00000579283 293 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AC106820.2-201ENST00000563775 3264 ntBASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms