Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 MIR1908-201ENST00000410394 80 ntBASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 AL355994.2-201ENST00000447882 704 ntBASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 CTBP2P5-201ENST00000454986 1264 ntBASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 MIR4321-201ENST00000592276 80 ntBASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 AL391069.4-201ENST00000609583 481 ntBASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 RPSAP52-203ENST00000622976 1023 ntBASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 PDIA3P1-201ENST00000471856 1510 ntBASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 FO681548.1-201ENST00000455617 1132 ntBASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 CU634019.7-201ENST00000624153 1185 ntBASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 FP236241.2-201ENST00000624906 1185 ntBASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 AL031731.1-201ENST00000642131 2094 ntBASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PCDHGA1Q9Y5H4 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PCDHGA1Q9Y5H4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms