Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 CDC14C-201ENST00000428251 1719 ntBASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PAAF1Q9BRP4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 OR8S1-201ENST00000310194 1080 ntBASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 MEP1AP4-201ENST00000423244 1087 ntBASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 KRT18P64-201ENST00000434946 1219 ntBASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 RPL13P2-201ENST00000440687 659 ntBASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 GIMAP3P-201ENST00000495150 836 ntBASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PAAF1Q9BRP4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AC018892.3-201ENST00000623986 2499 ntBASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AL512384.1-201ENST00000406683 331 ntBASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AC093726.1-201ENST00000608064 963 ntBASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 AL391069.4-201ENST00000609583 481 ntBASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PAAF1Q9BRP4 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 HAUS4P1-201ENST00000406739 1145 ntBASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 RN7SL837P-201ENST00000463010 287 ntBASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms