Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 MIR658-201ENST00000385210 100 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AC093004.1-201ENST00000508850 424 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 DOC2GP-202ENST00000514950 1163 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 KRT17P8-201ENST00000540749 863 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AC132938.2-201ENST00000579188 680 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AL591163.1-201ENST00000641757 987 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AC022211.2-201ENST00000585075 2527 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 CYP4F24P-201ENST00000586049 1580 ntBASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 AC114501.2-201ENST00000439631 535 ntBASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 SPDYE18-201ENST00000510091 1050 ntBASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 AC106886.1-201ENST00000568660 600 ntBASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 AC008494.3-201ENST00000606615 944 ntBASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 AL109936.8-201ENST00000641772 604 ntBASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDDC3Q8N4P3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AC004461.2-201ENST00000629517 803 ntBASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 AL592424.1-201ENST00000563624 1536 ntBASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDDC3Q8N4P3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms