Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 ACTG1P3-201ENST00000431775 1114 ntBASIC18.51■□□□□ 0.55
HMGCS2P54868 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGCS2P54868 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGCS2P54868 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.51■□□□□ 0.55
HMGCS2P54868 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGCS2P54868 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGCS2P54868 AC005332.8-201ENST00000622750 2735 ntBASIC18.51■□□□□ 0.55
HMGCS2P54868 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGCS2P54868 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.51■□□□□ 0.55
HMGCS2P54868 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HMGCS2P54868 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGCS2P54868 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
HMGCS2P54868 AC093525.8-201ENST00000624099 1342 ntBASIC18.5■□□□□ 0.55
HMGCS2P54868 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HMGCS2P54868 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGCS2P54868 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGCS2P54868 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.5■□□□□ 0.55
HMGCS2P54868 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HMGCS2P54868 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
HMGCS2P54868 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGCS2P54868 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGCS2P54868 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGCS2P54868 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGCS2P54868 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGCS2P54868 KLF2P4-201ENST00000451959 1225 ntBASIC18.5■□□□□ 0.55
HMGCS2P54868 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
HMGCS2P54868 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGCS2P54868 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGCS2P54868 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HMGCS2P54868 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.5■□□□□ 0.55
HMGCS2P54868 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGCS2P54868 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGCS2P54868 MIR4525-201ENST00000580000 75 ntBASIC18.5■□□□□ 0.55
HMGCS2P54868 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.5■□□□□ 0.55
HMGCS2P54868 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HMGCS2P54868 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGCS2P54868 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGCS2P54868 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGCS2P54868 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HMGCS2P54868 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HMGCS2P54868 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGCS2P54868 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HMGCS2P54868 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HMGCS2P54868 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 BCRP2-202ENST00000447763 634 ntBASIC18.49■□□□□ 0.55
HMGCS2P54868 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGCS2P54868 BCRP6-201ENST00000510112 632 ntBASIC18.49■□□□□ 0.55
HMGCS2P54868 BCRP7-201ENST00000511549 544 ntBASIC18.49■□□□□ 0.55
HMGCS2P54868 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.49■□□□□ 0.55
HMGCS2P54868 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.49■□□□□ 0.55
HMGCS2P54868 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGCS2P54868 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 MIR4538-201ENST00000581377 78 ntBASIC18.49■□□□□ 0.55
HMGCS2P54868 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGCS2P54868 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGCS2P54868 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGCS2P54868 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms