Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH6P52701 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
MSH6P52701 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH6P52701 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC22.07■■□□□ 1.12
MSH6P52701 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 KRTAP19-9P-201ENST00000421795 191 ntBASIC22.07■■□□□ 1.12
MSH6P52701 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH6P52701 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 AC243562.2-201ENST00000561247 970 ntBASIC22.07■■□□□ 1.12
MSH6P52701 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH6P52701 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH6P52701 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC22.07■■□□□ 1.12
MSH6P52701 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH6P52701 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
MSH6P52701 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH6P52701 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH6P52701 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 PCGF3-213ENST00000620529 1899 ntBASIC22.06■■□□□ 1.12
MSH6P52701 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC22.06■■□□□ 1.12
MSH6P52701 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
MSH6P52701 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
MSH6P52701 DEF8-202ENST00000418391 852 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH6P52701 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC22.06■■□□□ 1.12
MSH6P52701 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH6P52701 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 AC000095.1-201ENST00000603208 874 ntBASIC22.06■■□□□ 1.12
MSH6P52701 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH6P52701 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH6P52701 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH6P52701 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH6P52701 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
MSH6P52701 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH6P52701 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH6P52701 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC22.06■■□□□ 1.12
MSH6P52701 AC005622.1-201ENST00000636801 1703 ntBASIC22.06■■□□□ 1.12
MSH6P52701 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
MSH6P52701 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
MSH6P52701 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC22.05■■□□□ 1.12
MSH6P52701 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 AC245884.6-201ENST00000515672 1067 ntBASIC22.05■■□□□ 1.12
MSH6P52701 KSR1-207ENST00000578981 748 ntTSL 4 BASIC22.05■■□□□ 1.12
MSH6P52701 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC22.05■■□□□ 1.12
MSH6P52701 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 CYGB-203ENST00000589145 788 ntTSL 3 BASIC22.05■■□□□ 1.12
MSH6P52701 KLK3-207ENST00000595952 969 ntTSL 3 BASIC22.05■■□□□ 1.12
MSH6P52701 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC22.05■■□□□ 1.12
MSH6P52701 AL451050.2-201ENST00000606967 682 ntBASIC22.05■■□□□ 1.12
MSH6P52701 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC22.05■■□□□ 1.12
MSH6P52701 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC22.05■■□□□ 1.12
MSH6P52701 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC22.05■■□□□ 1.12
MSH6P52701 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC22.05■■□□□ 1.12
MSH6P52701 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH6P52701 AC139713.2-201ENST00000641328 2723 ntBASIC22.04■■□□□ 1.12
MSH6P52701 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
MSH6P52701 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
MSH6P52701 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
MSH6P52701 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
MSH6P52701 MIR1202-201ENST00000408529 83 ntBASIC22.04■■□□□ 1.12
MSH6P52701 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC22.04■■□□□ 1.12
MSH6P52701 RPL17P11-201ENST00000417593 544 ntBASIC22.04■■□□□ 1.12
MSH6P52701 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH6P52701 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC22.04■■□□□ 1.12
MSH6P52701 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH6P52701 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC22.04■■□□□ 1.12
MSH6P52701 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH6P52701 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC22.04■■□□□ 1.12
MSH6P52701 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms