Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC21.03■□□□□ 0.96
COL3A1P02461 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC21.03■□□□□ 0.96
COL3A1P02461 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC21.03■□□□□ 0.96
COL3A1P02461 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC21.03■□□□□ 0.96
COL3A1P02461 TMEM14DP-201ENST00000422205 345 ntBASIC21.03■□□□□ 0.96
COL3A1P02461 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC21.03■□□□□ 0.96
COL3A1P02461 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COL3A1P02461 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC21.03■□□□□ 0.96
COL3A1P02461 FADS2-205ENST00000517839 469 ntTSL 3 BASIC21.03■□□□□ 0.96
COL3A1P02461 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21.03■□□□□ 0.96
COL3A1P02461 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
COL3A1P02461 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
COL3A1P02461 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC21.03■□□□□ 0.96
COL3A1P02461 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL3A1P02461 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COL3A1P02461 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 POLE2-203ENST00000553805 496 ntTSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC21.02■□□□□ 0.96
COL3A1P02461 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.02■□□□□ 0.96
COL3A1P02461 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.02■□□□□ 0.96
COL3A1P02461 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.02■□□□□ 0.96
COL3A1P02461 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL3A1P02461 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC21.02■□□□□ 0.96
COL3A1P02461 AL365203.3-201ENST00000609742 2057 ntBASIC21.02■□□□□ 0.96
COL3A1P02461 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL3A1P02461 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC21.02■□□□□ 0.95
COL3A1P02461 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 MEP1AP4-201ENST00000423244 1087 ntBASIC21.01■□□□□ 0.95
COL3A1P02461 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC21.01■□□□□ 0.95
COL3A1P02461 NAA50-208ENST00000497255 789 ntTSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC21.01■□□□□ 0.95
COL3A1P02461 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC21.01■□□□□ 0.95
COL3A1P02461 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC21.01■□□□□ 0.95
COL3A1P02461 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC21.01■□□□□ 0.95
COL3A1P02461 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC21.01■□□□□ 0.95
COL3A1P02461 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.01■□□□□ 0.95
COL3A1P02461 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.01■□□□□ 0.95
COL3A1P02461 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC21.01■□□□□ 0.95
COL3A1P02461 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
COL3A1P02461 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 AC087499.6-201ENST00000411576 835 ntBASIC21.01■□□□□ 0.95
COL3A1P02461 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC21.01■□□□□ 0.95
COL3A1P02461 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 MYCLP2-201ENST00000449268 967 ntBASIC21.01■□□□□ 0.95
COL3A1P02461 RN7SL837P-201ENST00000463010 287 ntBASIC21.01■□□□□ 0.95
COL3A1P02461 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC21.01■□□□□ 0.95
COL3A1P02461 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.01■□□□□ 0.95
COL3A1P02461 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL3A1P02461 UBL5-208ENST00000593087 320 ntTSL 3 BASIC21.01■□□□□ 0.95
COL3A1P02461 AL049840.4-201ENST00000602422 811 ntBASIC21.01■□□□□ 0.95
COL3A1P02461 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
COL3A1P02461 AC138969.3-201ENST00000546612 1459 ntBASIC21■□□□□ 0.95
COL3A1P02461 AC138932.2-201ENST00000548268 1459 ntBASIC21■□□□□ 0.95
COL3A1P02461 AC126755.4-201ENST00000549796 1459 ntBASIC21■□□□□ 0.95
COL3A1P02461 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL3A1P02461 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms