Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 POR-201ENST00000394893 2532 ntTSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
SMKR1H3BMG3 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC11.9□□□□□ -0.51
SMKR1H3BMG3 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.51
SMKR1H3BMG3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.51
SMKR1H3BMG3 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC11.9□□□□□ -0.51
SMKR1H3BMG3 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.51
SMKR1H3BMG3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 PTENP1-202ENST00000532280 3996 ntBASIC11.89□□□□□ -0.51
SMKR1H3BMG3 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AL645929.1-201ENST00000420084 975 ntBASIC11.89□□□□□ -0.51
SMKR1H3BMG3 MDH2-205ENST00000461263 648 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CLN6-204ENST00000564752 900 ntTSL 3 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CLN6-214ENST00000636314 442 ntTSL 3 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
SMKR1H3BMG3 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 TSPY5P-201ENST00000426936 936 ntBASIC11.88□□□□□ -0.51
SMKR1H3BMG3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 HOMER2P1-201ENST00000455653 964 ntBASIC11.88□□□□□ -0.51
SMKR1H3BMG3 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 AP005901.3-202ENST00000581653 237 ntBASIC11.88□□□□□ -0.51
SMKR1H3BMG3 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 AC083849.1-201ENST00000615227 514 ntBASIC11.88□□□□□ -0.51
SMKR1H3BMG3 CICP23-201ENST00000605013 2741 ntBASIC11.88□□□□□ -0.51
SMKR1H3BMG3 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms