Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.59■□□□□ 0.25
CDX2Q99626 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CDX2Q99626 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.59■□□□□ 0.25
CDX2Q99626 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.59■□□□□ 0.25
CDX2Q99626 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CDX2Q99626 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 TPM3P8-201ENST00000330554 643 ntBASIC16.59■□□□□ 0.25
CDX2Q99626 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
CDX2Q99626 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.59■□□□□ 0.25
CDX2Q99626 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.59■□□□□ 0.25
CDX2Q99626 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
CDX2Q99626 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.59■□□□□ 0.25
CDX2Q99626 AC010234.1-201ENST00000494599 870 ntBASIC16.59■□□□□ 0.25
CDX2Q99626 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.59■□□□□ 0.25
CDX2Q99626 IGLV3-15-201ENST00000518356 244 ntBASIC16.59■□□□□ 0.25
CDX2Q99626 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC16.59■□□□□ 0.25
CDX2Q99626 PPY2P-201ENST00000582808 702 ntBASIC16.59■□□□□ 0.25
CDX2Q99626 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC16.59■□□□□ 0.25
CDX2Q99626 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.59■□□□□ 0.25
CDX2Q99626 AL805961.1-201ENST00000642026 753 ntBASIC16.59■□□□□ 0.25
CDX2Q99626 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.59■□□□□ 0.25
CDX2Q99626 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX2Q99626 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
CDX2Q99626 AC005622.1-201ENST00000636801 1703 ntBASIC16.59■□□□□ 0.25
CDX2Q99626 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.59■□□□□ 0.25
CDX2Q99626 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.58■□□□□ 0.25
CDX2Q99626 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDX2Q99626 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDX2Q99626 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
CDX2Q99626 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
CDX2Q99626 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDX2Q99626 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.58■□□□□ 0.24
CDX2Q99626 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX2Q99626 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CDX2Q99626 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.58■□□□□ 0.24
CDX2Q99626 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX2Q99626 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.58■□□□□ 0.24
CDX2Q99626 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.58■□□□□ 0.24
CDX2Q99626 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.58■□□□□ 0.24
CDX2Q99626 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.58■□□□□ 0.24
CDX2Q99626 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.58■□□□□ 0.24
CDX2Q99626 AC092171.5-201ENST00000608012 942 ntBASIC16.58■□□□□ 0.24
CDX2Q99626 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.58■□□□□ 0.24
CDX2Q99626 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX2Q99626 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.58■□□□□ 0.24
CDX2Q99626 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CDX2Q99626 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.58■□□□□ 0.24
CDX2Q99626 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.58■□□□□ 0.24
CDX2Q99626 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX2Q99626 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.58■□□□□ 0.24
CDX2Q99626 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX2Q99626 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX2Q99626 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX2Q99626 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 AL121723.1-201ENST00000445194 1519 ntBASIC16.57■□□□□ 0.24
CDX2Q99626 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX2Q99626 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX2Q99626 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX2Q99626 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX2Q99626 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.57■□□□□ 0.24
CDX2Q99626 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
CDX2Q99626 AC243562.2-201ENST00000561247 970 ntBASIC16.57■□□□□ 0.24
CDX2Q99626 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.57■□□□□ 0.24
CDX2Q99626 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.57■□□□□ 0.24
CDX2Q99626 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.57■□□□□ 0.24
CDX2Q99626 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 AC012044.1-201ENST00000603431 297 ntBASIC16.57■□□□□ 0.24
CDX2Q99626 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.57■□□□□ 0.24
CDX2Q99626 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CDX2Q99626 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms