Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 INE1-201ENST00000456273 945 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC023310.3-201ENST00000557027 670 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC100756.1-201ENST00000562736 682 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC138749.3-201ENST00000567691 622 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 AL359881.2-201ENST00000602973 570 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC099568.2-201ENST00000609194 695 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC074044.1-201ENST00000609673 707 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 AC116165.1-201ENST00000611806 668 ntBASIC17.17■□□□□ 0.34
USP41Q3LFD5 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.17■□□□□ 0.34
USP41Q3LFD5 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USP41Q3LFD5 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 AL512384.1-201ENST00000406683 331 ntBASIC17.16■□□□□ 0.34
USP41Q3LFD5 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 GIMAP3P-201ENST00000495150 836 ntBASIC17.16■□□□□ 0.34
USP41Q3LFD5 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 TIMM17BP1-201ENST00000545713 516 ntBASIC17.16■□□□□ 0.34
USP41Q3LFD5 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 WASH4P-201ENST00000564273 1246 ntBASIC17.16■□□□□ 0.34
USP41Q3LFD5 AC092337.1-201ENST00000568699 1129 ntBASIC17.16■□□□□ 0.34
USP41Q3LFD5 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
USP41Q3LFD5 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP41Q3LFD5 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 HIST3H2BA-201ENST00000436555 524 ntBASIC17.15■□□□□ 0.34
USP41Q3LFD5 U91328.1-201ENST00000437528 223 ntBASIC17.15■□□□□ 0.34
USP41Q3LFD5 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 AL589987.1-201ENST00000453380 819 ntBASIC17.15■□□□□ 0.34
USP41Q3LFD5 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms