Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA3P55318 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA3P55318 AC026396.1-201ENST00000419388 421 ntBASIC12.23□□□□□ -0.45
FOXA3P55318 AL845331.1-201ENST00000424978 1190 ntBASIC12.23□□□□□ -0.45
FOXA3P55318 AC246785.2-201ENST00000432512 513 ntBASIC12.23□□□□□ -0.45
FOXA3P55318 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC12.23□□□□□ -0.45
FOXA3P55318 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA3P55318 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 P4HB-223ENST00000576390 439 ntTSL 4 BASIC12.23□□□□□ -0.45
FOXA3P55318 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
FOXA3P55318 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
FOXA3P55318 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA3P55318 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC12.22□□□□□ -0.45
FOXA3P55318 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 NABP1-203ENST00000409510 843 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC12.22□□□□□ -0.45
FOXA3P55318 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC12.22□□□□□ -0.45
FOXA3P55318 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC12.22□□□□□ -0.45
FOXA3P55318 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 MPDU1-223ENST00000582151 728 ntBASIC12.22□□□□□ -0.45
FOXA3P55318 FGF14-AS2-201ENST00000606448 1074 ntBASIC12.22□□□□□ -0.45
FOXA3P55318 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 AC067750.1-201ENST00000608826 6545 ntBASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms