Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 SNX33P1-201ENST00000592116 1762 ntBASIC17.37■□□□□ 0.37
VCPP55072 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VCPP55072 PCDHA1-201ENST00000378133 2726 ntBASIC17.37■□□□□ 0.37
VCPP55072 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.37■□□□□ 0.37
VCPP55072 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.37■□□□□ 0.37
VCPP55072 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VCPP55072 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.37■□□□□ 0.37
VCPP55072 MTHFR-217ENST00000641820 1569 ntBASIC17.36■□□□□ 0.37
VCPP55072 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.36■□□□□ 0.37
VCPP55072 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
VCPP55072 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.36■□□□□ 0.37
VCPP55072 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.36■□□□□ 0.37
VCPP55072 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.36■□□□□ 0.37
VCPP55072 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.36■□□□□ 0.37
VCPP55072 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.36■□□□□ 0.37
VCPP55072 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.36■□□□□ 0.37
VCPP55072 MPDU1-223ENST00000582151 728 ntBASIC17.36■□□□□ 0.37
VCPP55072 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.36■□□□□ 0.37
VCPP55072 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.36■□□□□ 0.37
VCPP55072 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 IGHV3-72-202ENST00000621503 303 ntBASIC17.36■□□□□ 0.37
VCPP55072 AL590560.3-201ENST00000623350 461 ntBASIC17.36■□□□□ 0.37
VCPP55072 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.36■□□□□ 0.37
VCPP55072 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VCPP55072 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 AC138969.3-201ENST00000546612 1459 ntBASIC17.36■□□□□ 0.37
VCPP55072 AC138932.2-201ENST00000548268 1459 ntBASIC17.36■□□□□ 0.37
VCPP55072 AC126755.4-201ENST00000549796 1459 ntBASIC17.36■□□□□ 0.37
VCPP55072 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.36■□□□□ 0.37
VCPP55072 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
VCPP55072 AC022144.1-201ENST00000602255 1580 ntBASIC17.36■□□□□ 0.37
VCPP55072 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VCPP55072 GGT3P-204ENST00000453783 1664 ntBASIC17.36■□□□□ 0.37
VCPP55072 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.35■□□□□ 0.37
VCPP55072 AC131009.4-201ENST00000624048 1740 ntBASIC17.35■□□□□ 0.37
VCPP55072 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.35■□□□□ 0.37
VCPP55072 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
VCPP55072 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.35■□□□□ 0.37
VCPP55072 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.35■□□□□ 0.37
VCPP55072 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.35■□□□□ 0.37
VCPP55072 AC027369.6-201ENST00000525520 931 ntBASIC17.35■□□□□ 0.37
VCPP55072 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.35■□□□□ 0.37
VCPP55072 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 TP53TG3HP-202ENST00000569755 579 ntBASIC17.35■□□□□ 0.37
VCPP55072 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.35■□□□□ 0.37
VCPP55072 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.35■□□□□ 0.37
VCPP55072 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.35■□□□□ 0.37
VCPP55072 AC091167.2-201ENST00000579581 588 ntBASIC17.35■□□□□ 0.37
VCPP55072 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.35■□□□□ 0.37
VCPP55072 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.35■□□□□ 0.37
VCPP55072 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.35■□□□□ 0.37
VCPP55072 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.35■□□□□ 0.37
VCPP55072 AC084121.4-201ENST00000641598 221 ntBASIC17.35■□□□□ 0.37
VCPP55072 AF228730.8-201ENST00000642140 221 ntBASIC17.35■□□□□ 0.37
VCPP55072 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.35■□□□□ 0.37
VCPP55072 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.35■□□□□ 0.37
VCPP55072 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.35■□□□□ 0.37
VCPP55072 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VCPP55072 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms