Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.17■□□□□ 0.5
CIITAP33076 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.17■□□□□ 0.5
CIITAP33076 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.17■□□□□ 0.5
CIITAP33076 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.17■□□□□ 0.5
CIITAP33076 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.17■□□□□ 0.5
CIITAP33076 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.17■□□□□ 0.5
CIITAP33076 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.17■□□□□ 0.5
CIITAP33076 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.17■□□□□ 0.5
CIITAP33076 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 AC011467.4-201ENST00000594891 528 ntBASIC18.17■□□□□ 0.5
CIITAP33076 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.17■□□□□ 0.5
CIITAP33076 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.17■□□□□ 0.5
CIITAP33076 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
CIITAP33076 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.17■□□□□ 0.5
CIITAP33076 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 AC011477.6-201ENST00000604980 1927 ntBASIC18.17■□□□□ 0.5
CIITAP33076 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CIITAP33076 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CIITAP33076 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CIITAP33076 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CIITAP33076 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.16■□□□□ 0.5
CIITAP33076 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.16■□□□□ 0.5
CIITAP33076 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CIITAP33076 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.16■□□□□ 0.5
CIITAP33076 INGX-202ENST00000489074 768 ntBASIC18.16■□□□□ 0.5
CIITAP33076 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.16■□□□□ 0.5
CIITAP33076 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.16■□□□□ 0.5
CIITAP33076 MIR6069-201ENST00000620069 79 ntBASIC18.16■□□□□ 0.5
CIITAP33076 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.16■□□□□ 0.5
CIITAP33076 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.16■□□□□ 0.5
CIITAP33076 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.16■□□□□ 0.5
CIITAP33076 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.16■□□□□ 0.5
CIITAP33076 AC022144.1-201ENST00000602255 1580 ntBASIC18.16■□□□□ 0.5
CIITAP33076 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CIITAP33076 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CIITAP33076 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.15■□□□□ 0.5
CIITAP33076 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CIITAP33076 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.15■□□□□ 0.5
CIITAP33076 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CIITAP33076 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.15■□□□□ 0.5
CIITAP33076 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 UGT1A2P-201ENST00000454886 866 ntBASIC18.15■□□□□ 0.5
CIITAP33076 RN7SL618P-201ENST00000477850 296 ntBASIC18.15■□□□□ 0.5
CIITAP33076 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.15■□□□□ 0.5
CIITAP33076 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.15■□□□□ 0.5
CIITAP33076 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.15■□□□□ 0.5
CIITAP33076 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CIITAP33076 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.15■□□□□ 0.5
CIITAP33076 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CIITAP33076 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.15■□□□□ 0.5
CIITAP33076 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CIITAP33076 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CIITAP33076 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.14■□□□□ 0.5
CIITAP33076 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CIITAP33076 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.14■□□□□ 0.5
CIITAP33076 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CIITAP33076 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.14■□□□□ 0.49
CIITAP33076 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.14■□□□□ 0.49
CIITAP33076 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CIITAP33076 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.14■□□□□ 0.49
CIITAP33076 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CIITAP33076 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
CIITAP33076 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CIITAP33076 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CIITAP33076 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CIITAP33076 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CIITAP33076 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms