Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AGGF1P2-201ENST00000426656 2106 ntBASIC21.21■□□□□ 0.99
HOXC9P31274 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC9P31274 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC21.21■□□□□ 0.99
HOXC9P31274 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC21.21■□□□□ 0.99
HOXC9P31274 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC21.21■□□□□ 0.99
HOXC9P31274 AL450472.2-201ENST00000603663 1156 ntBASIC21.21■□□□□ 0.99
HOXC9P31274 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC21.21■□□□□ 0.99
HOXC9P31274 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC21.21■□□□□ 0.99
HOXC9P31274 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC9P31274 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC9P31274 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC9P31274 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
HOXC9P31274 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
HOXC9P31274 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC9P31274 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC21.21■□□□□ 0.99
HOXC9P31274 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HOXC9P31274 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
HOXC9P31274 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.99
HOXC9P31274 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 APOA1-205ENST00000375329 927 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 CTBP2P5-201ENST00000454986 1264 ntBASIC21.2■□□□□ 0.98
HOXC9P31274 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC21.2■□□□□ 0.98
HOXC9P31274 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC21.2■□□□□ 0.98
HOXC9P31274 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC21.2■□□□□ 0.98
HOXC9P31274 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.2■□□□□ 0.98
HOXC9P31274 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 AL049840.4-201ENST00000602422 811 ntBASIC21.2■□□□□ 0.98
HOXC9P31274 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC21.2■□□□□ 0.98
HOXC9P31274 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC9P31274 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HOXC9P31274 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HOXC9P31274 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC21.19■□□□□ 0.98
HOXC9P31274 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
HOXC9P31274 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 AC011676.5-201ENST00000624864 2660 ntBASIC21.19■□□□□ 0.98
HOXC9P31274 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
HOXC9P31274 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HOXC9P31274 LBX2-201ENST00000341396 886 ntTSL 3 BASIC21.19■□□□□ 0.98
HOXC9P31274 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC21.19■□□□□ 0.98
HOXC9P31274 AC134915.1-201ENST00000426461 574 ntBASIC21.19■□□□□ 0.98
HOXC9P31274 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC21.19■□□□□ 0.98
HOXC9P31274 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC21.19■□□□□ 0.98
HOXC9P31274 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 CLUHP6-201ENST00000580789 941 ntBASIC21.19■□□□□ 0.98
HOXC9P31274 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HOXC9P31274 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HOXC9P31274 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC21.19■□□□□ 0.98
HOXC9P31274 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC9P31274 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
HOXC9P31274 AL607033.1-201ENST00000623900 1599 ntBASIC21.19■□□□□ 0.98
HOXC9P31274 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HOXC9P31274 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC21.18■□□□□ 0.98
HOXC9P31274 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC21.18■□□□□ 0.98
HOXC9P31274 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC21.18■□□□□ 0.98
HOXC9P31274 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.18■□□□□ 0.98
HOXC9P31274 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms