Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.86□□□□□ -0.03
MSX1P28360 TERF1P3-201ENST00000505638 1227 ntBASIC14.86□□□□□ -0.03
MSX1P28360 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX1P28360 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX1P28360 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX1P28360 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX1P28360 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 MIR4321-201ENST00000592276 80 ntBASIC14.86□□□□□ -0.03
MSX1P28360 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.85□□□□□ -0.03
MSX1P28360 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.85□□□□□ -0.03
MSX1P28360 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
MSX1P28360 AC006449.5-201ENST00000610658 2098 ntBASIC14.85□□□□□ -0.03
MSX1P28360 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
MSX1P28360 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
MSX1P28360 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 AC015922.1-201ENST00000421102 1152 ntBASIC14.85□□□□□ -0.03
MSX1P28360 RBPMS2P1-201ENST00000437762 623 ntBASIC14.85□□□□□ -0.03
MSX1P28360 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
MSX1P28360 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX1P28360 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.85□□□□□ -0.03
MSX1P28360 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 SLC25A39P2-201ENST00000537614 270 ntBASIC14.85□□□□□ -0.03
MSX1P28360 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.85□□□□□ -0.03
MSX1P28360 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 AC132872.1-201ENST00000566986 1195 ntBASIC14.85□□□□□ -0.03
MSX1P28360 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.85□□□□□ -0.03
MSX1P28360 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX1P28360 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.85□□□□□ -0.03
MSX1P28360 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.85□□□□□ -0.03
MSX1P28360 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
MSX1P28360 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 FOXO1B-201ENST00000504678 1527 ntBASIC14.85□□□□□ -0.03
MSX1P28360 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX1P28360 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.85□□□□□ -0.03
MSX1P28360 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX1P28360 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
MSX1P28360 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 AC126755.1-201ENST00000525846 6405 ntBASIC14.84□□□□□ -0.03
MSX1P28360 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX1P28360 MIR648-201ENST00000385046 94 ntBASIC14.84□□□□□ -0.03
MSX1P28360 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX1P28360 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX1P28360 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
MSX1P28360 AC236430.1-201ENST00000402231 743 ntBASIC14.84□□□□□ -0.03
MSX1P28360 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX1P28360 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.84□□□□□ -0.03
MSX1P28360 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX1P28360 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms