Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
VIMP08670 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 LINC01101-201ENST00000622953 1884 ntBASIC16.36■□□□□ 0.21
VIMP08670 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 AC093827.2-201ENST00000512654 315 ntBASIC16.36■□□□□ 0.21
VIMP08670 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.36■□□□□ 0.21
VIMP08670 MIR4492-201ENST00000581627 80 ntBASIC16.36■□□□□ 0.21
VIMP08670 MPDU1-223ENST00000582151 728 ntBASIC16.36■□□□□ 0.21
VIMP08670 AC011467.2-201ENST00000598425 242 ntBASIC16.36■□□□□ 0.21
VIMP08670 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.36■□□□□ 0.21
VIMP08670 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.36■□□□□ 0.21
VIMP08670 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.35■□□□□ 0.21
VIMP08670 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.35■□□□□ 0.21
VIMP08670 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.35■□□□□ 0.21
VIMP08670 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.35■□□□□ 0.21
VIMP08670 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.35■□□□□ 0.21
VIMP08670 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 PGM5P2-202ENST00000637225 1043 ntBASIC16.35■□□□□ 0.21
VIMP08670 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC16.35■□□□□ 0.21
VIMP08670 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VIMP08670 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.35■□□□□ 0.21
VIMP08670 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 PMPCAP1-201ENST00000508114 1576 ntBASIC16.34■□□□□ 0.21
VIMP08670 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VIMP08670 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VIMP08670 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VIMP08670 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VIMP08670 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
VIMP08670 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.34■□□□□ 0.21
VIMP08670 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
VIMP08670 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VIMP08670 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms