Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC3O15379 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC3O15379 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC3O15379 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC3O15379 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC3O15379 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC3O15379 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.8■□□□□ 0.12
HDAC3O15379 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HDAC3O15379 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.8■□□□□ 0.12
HDAC3O15379 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDAC3O15379 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.8■□□□□ 0.12
HDAC3O15379 PMS2P4-201ENST00000412466 1052 ntBASIC15.8■□□□□ 0.12
HDAC3O15379 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.8■□□□□ 0.12
HDAC3O15379 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.8■□□□□ 0.12
HDAC3O15379 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
HDAC3O15379 AL031055.1-201ENST00000606362 631 ntBASIC15.8■□□□□ 0.12
HDAC3O15379 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.8■□□□□ 0.12
HDAC3O15379 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HDAC3O15379 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.8■□□□□ 0.12
HDAC3O15379 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HDAC3O15379 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.79■□□□□ 0.12
HDAC3O15379 FAM185BP-201ENST00000443595 716 ntBASIC15.79■□□□□ 0.12
HDAC3O15379 AC093724.1-201ENST00000448659 1027 ntBASIC15.79■□□□□ 0.12
HDAC3O15379 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.79■□□□□ 0.12
HDAC3O15379 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 ACTL9-202ENST00000612068 1252 ntBASIC15.79■□□□□ 0.12
HDAC3O15379 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 AC093458.2-201ENST00000623150 629 ntBASIC15.79■□□□□ 0.12
HDAC3O15379 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 AC068587.6-202ENST00000641839 5619 ntBASIC15.79■□□□□ 0.12
HDAC3O15379 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HDAC3O15379 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
HDAC3O15379 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.79■□□□□ 0.12
HDAC3O15379 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.79■□□□□ 0.12
HDAC3O15379 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HDAC3O15379 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms