Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DUX4L2-201ENST00000561772 1275 ntBASIC24.69■■□□□ 1.54
TTC28Q96AY4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.69■■□□□ 1.54
TTC28Q96AY4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.69■■□□□ 1.54
TTC28Q96AY4 DUX4L6-201ENST00000626483 1275 ntBASIC24.69■■□□□ 1.54
TTC28Q96AY4 DUX4L1-201ENST00000627662 1275 ntBASIC24.69■■□□□ 1.54
TTC28Q96AY4 DUX4L8-201ENST00000629013 1275 ntBASIC24.69■■□□□ 1.54
TTC28Q96AY4 DUX4L3-201ENST00000630187 1275 ntBASIC24.69■■□□□ 1.54
TTC28Q96AY4 DUX4L7-201ENST00000630678 1275 ntBASIC24.69■■□□□ 1.54
TTC28Q96AY4 DUX4L5-201ENST00000630834 1275 ntBASIC24.69■■□□□ 1.54
TTC28Q96AY4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
TTC28Q96AY4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.68■■□□□ 1.54
TTC28Q96AY4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
TTC28Q96AY4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
TTC28Q96AY4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TTC28Q96AY4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.67■■□□□ 1.54
TTC28Q96AY4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
TTC28Q96AY4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
TTC28Q96AY4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.67■■□□□ 1.54
TTC28Q96AY4 MIR4767-201ENST00000582827 78 ntBASIC24.67■■□□□ 1.54
TTC28Q96AY4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
TTC28Q96AY4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.66■■□□□ 1.54
TTC28Q96AY4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TTC28Q96AY4 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TTC28Q96AY4 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
TTC28Q96AY4 SP2-202ENST00000613139 908 ntTSL 5 BASIC24.66■■□□□ 1.54
TTC28Q96AY4 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TTC28Q96AY4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC24.66■■□□□ 1.54
TTC28Q96AY4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.66■■□□□ 1.54
TTC28Q96AY4 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
TTC28Q96AY4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
TTC28Q96AY4 AC027682.1-201ENST00000562846 899 ntBASIC24.64■■□□□ 1.54
TTC28Q96AY4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.64■■□□□ 1.54
TTC28Q96AY4 SYT6-210ENST00000641643 1587 ntBASIC24.64■■□□□ 1.54
TTC28Q96AY4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
TTC28Q96AY4 AC004911.1-201ENST00000416316 871 ntBASIC24.64■■□□□ 1.53
TTC28Q96AY4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.64■■□□□ 1.53
TTC28Q96AY4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
TTC28Q96AY4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
TTC28Q96AY4 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC24.63■■□□□ 1.53
TTC28Q96AY4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TTC28Q96AY4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
TTC28Q96AY4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
TTC28Q96AY4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
TTC28Q96AY4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
TTC28Q96AY4 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
TTC28Q96AY4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.63■■□□□ 1.53
TTC28Q96AY4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.63■■□□□ 1.53
TTC28Q96AY4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
TTC28Q96AY4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.62■■□□□ 1.53
TTC28Q96AY4 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC24.61■■□□□ 1.53
TTC28Q96AY4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
TTC28Q96AY4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.61■■□□□ 1.53
TTC28Q96AY4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.61■■□□□ 1.53
TTC28Q96AY4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC24.61■■□□□ 1.53
TTC28Q96AY4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TTC28Q96AY4 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
TTC28Q96AY4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC24.6■■□□□ 1.53
TTC28Q96AY4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
TTC28Q96AY4 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
TTC28Q96AY4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.6■■□□□ 1.53
TTC28Q96AY4 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TTC28Q96AY4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC24.59■■□□□ 1.53
TTC28Q96AY4 AF131216.4-201ENST00000638924 1588 ntBASIC24.59■■□□□ 1.53
TTC28Q96AY4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TTC28Q96AY4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TTC28Q96AY4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TTC28Q96AY4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TTC28Q96AY4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.58■■□□□ 1.53
TTC28Q96AY4 RAP2CP1-201ENST00000605103 478 ntBASIC24.58■■□□□ 1.53
TTC28Q96AY4 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.58■■□□□ 1.53
TTC28Q96AY4 TMEM191A-211ENST00000637163 1067 ntBASIC24.58■■□□□ 1.53
TTC28Q96AY4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
TTC28Q96AY4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.57■■□□□ 1.52
TTC28Q96AY4 AC008764.7-201ENST00000593779 1081 ntBASIC24.57■■□□□ 1.52
TTC28Q96AY4 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
TTC28Q96AY4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC24.57■■□□□ 1.52
TTC28Q96AY4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
TTC28Q96AY4 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC24.57■■□□□ 1.52
TTC28Q96AY4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC24.57■■□□□ 1.52
TTC28Q96AY4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
TTC28Q96AY4 YBX1P1-201ENST00000445822 960 ntBASIC24.56■■□□□ 1.52
TTC28Q96AY4 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
TTC28Q96AY4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC24.56■■□□□ 1.52
TTC28Q96AY4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.56■■□□□ 1.52
TTC28Q96AY4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.56■■□□□ 1.52
TTC28Q96AY4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.55■■□□□ 1.52
TTC28Q96AY4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
TTC28Q96AY4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TTC28Q96AY4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
TTC28Q96AY4 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TTC28Q96AY4 AK1-201ENST00000223836 736 ntTSL 3 BASIC24.54■■□□□ 1.52
TTC28Q96AY4 AC093827.2-201ENST00000512654 315 ntBASIC24.54■■□□□ 1.52
TTC28Q96AY4 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
TTC28Q96AY4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC24.54■■□□□ 1.52
TTC28Q96AY4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC24.54■■□□□ 1.52
TTC28Q96AY4 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.54■■□□□ 1.52
TTC28Q96AY4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TTC28Q96AY4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.53■■□□□ 1.52
TTC28Q96AY4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
TTC28Q96AY4 DUX4L19-201ENST00000557448 1267 ntBASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms