Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC30.99■■■□□ 2.55
RTF1Q92541 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
RTF1Q92541 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.98■■■□□ 2.55
RTF1Q92541 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
RTF1Q92541 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
RTF1Q92541 AC137630.3-201ENST00000607245 391 ntBASIC30.98■■■□□ 2.55
RTF1Q92541 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
RTF1Q92541 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
RTF1Q92541 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
RTF1Q92541 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
RTF1Q92541 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC30.97■■■□□ 2.55
RTF1Q92541 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
RTF1Q92541 AC011551.1-201ENST00000614101 683 ntBASIC30.97■■■□□ 2.55
RTF1Q92541 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
RTF1Q92541 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
RTF1Q92541 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
RTF1Q92541 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.96■■■□□ 2.55
RTF1Q92541 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.96■■■□□ 2.55
RTF1Q92541 MIR4281-201ENST00000580852 62 ntBASIC30.96■■■□□ 2.55
RTF1Q92541 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.96■■■□□ 2.55
RTF1Q92541 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
RTF1Q92541 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
RTF1Q92541 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.95■■■□□ 2.55
RTF1Q92541 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
RTF1Q92541 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
RTF1Q92541 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC30.95■■■□□ 2.55
RTF1Q92541 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
RTF1Q92541 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
RTF1Q92541 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.95■■■□□ 2.55
RTF1Q92541 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC30.95■■■□□ 2.55
RTF1Q92541 MIR4787-201ENST00000607364 84 ntBASIC30.95■■■□□ 2.55
RTF1Q92541 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
RTF1Q92541 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
RTF1Q92541 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC30.95■■■□□ 2.54
RTF1Q92541 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
RTF1Q92541 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC30.94■■■□□ 2.54
RTF1Q92541 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30.94■■■□□ 2.54
RTF1Q92541 GAK-223ENST00000628912 497 ntTSL 5 BASIC30.94■■■□□ 2.54
RTF1Q92541 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.94■■■□□ 2.54
RTF1Q92541 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
RTF1Q92541 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
RTF1Q92541 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.93■■■□□ 2.54
RTF1Q92541 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
RTF1Q92541 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC30.93■■■□□ 2.54
RTF1Q92541 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
RTF1Q92541 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
RTF1Q92541 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.92■■■□□ 2.54
RTF1Q92541 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
RTF1Q92541 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
RTF1Q92541 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.92■■■□□ 2.54
RTF1Q92541 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC30.92■■■□□ 2.54
RTF1Q92541 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC30.91■■■□□ 2.54
RTF1Q92541 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
RTF1Q92541 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
RTF1Q92541 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.91■■■□□ 2.54
RTF1Q92541 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.91■■■□□ 2.54
RTF1Q92541 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
RTF1Q92541 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
RTF1Q92541 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
RTF1Q92541 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC30.9■■■□□ 2.54
RTF1Q92541 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
RTF1Q92541 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.89■■■□□ 2.54
RTF1Q92541 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
RTF1Q92541 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC30.89■■■□□ 2.54
RTF1Q92541 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC30.89■■■□□ 2.54
RTF1Q92541 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC30.89■■■□□ 2.54
RTF1Q92541 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.89■■■□□ 2.54
RTF1Q92541 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.53
RTF1Q92541 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC30.89■■■□□ 2.53
RTF1Q92541 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.88■■■□□ 2.53
RTF1Q92541 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
RTF1Q92541 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
RTF1Q92541 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
RTF1Q92541 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
RTF1Q92541 AC021242.3-201ENST00000607598 1377 ntBASIC30.88■■■□□ 2.53
RTF1Q92541 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
RTF1Q92541 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RTF1Q92541 AL356441.2-201ENST00000443009 864 ntBASIC30.87■■■□□ 2.53
RTF1Q92541 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
RTF1Q92541 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC30.87■■■□□ 2.53
RTF1Q92541 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
RTF1Q92541 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RTF1Q92541 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
RTF1Q92541 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
RTF1Q92541 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
RTF1Q92541 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC30.86■■■□□ 2.53
RTF1Q92541 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
RTF1Q92541 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
RTF1Q92541 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
RTF1Q92541 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC30.85■■■□□ 2.53
RTF1Q92541 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.85■■■□□ 2.53
RTF1Q92541 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
RTF1Q92541 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.84■■■□□ 2.53
RTF1Q92541 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
RTF1Q92541 AC131212.1-201ENST00000613771 668 ntBASIC30.84■■■□□ 2.53
RTF1Q92541 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
RTF1Q92541 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
RTF1Q92541 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC30.83■■■□□ 2.53
RTF1Q92541 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
RTF1Q92541 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.82■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms