Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TM9SF3Q9HD45 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 CU639417.3-201ENST00000624240 1404 ntBASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 AL353779.1-201ENST00000434793 351 ntBASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 API5-211ENST00000534695 560 ntTSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 AC135586.1-201ENST00000539323 574 ntBASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 AL008721.1-201ENST00000609964 604 ntBASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.22■□□□□ 0.19
TM9SF3Q9HD45 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 AC140912.1-201ENST00000577171 1054 ntBASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
TM9SF3Q9HD45 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TM9SF3Q9HD45 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TM9SF3Q9HD45 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
TM9SF3Q9HD45 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TM9SF3Q9HD45 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TM9SF3Q9HD45 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.21■□□□□ 0.18
TM9SF3Q9HD45 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TM9SF3Q9HD45 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms