Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MIR4492-201ENST00000581627 80 ntBASIC15.61■□□□□ 0.09
VMP1Q96GC9 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 DBET-201ENST00000630918 3363 ntBASIC15.61■□□□□ 0.09
VMP1Q96GC9 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 AC004967.1-201ENST00000453589 447 ntBASIC15.6■□□□□ 0.09
VMP1Q96GC9 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 MIR4469-201ENST00000583919 79 ntBASIC15.6■□□□□ 0.09
VMP1Q96GC9 CYP2A7P1-201ENST00000595391 815 ntBASIC15.6■□□□□ 0.09
VMP1Q96GC9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 AC144831.1-201ENST00000573312 2656 ntBASIC15.6■□□□□ 0.09
VMP1Q96GC9 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.6■□□□□ 0.09
VMP1Q96GC9 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VMP1Q96GC9 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 CEND1P1-201ENST00000451006 455 ntBASIC15.59■□□□□ 0.09
VMP1Q96GC9 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 MIR3909-201ENST00000579518 119 ntBASIC15.59■□□□□ 0.09
VMP1Q96GC9 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 AC013467.2-201ENST00000605472 835 ntBASIC15.59■□□□□ 0.09
VMP1Q96GC9 AL031055.1-201ENST00000606362 631 ntBASIC15.59■□□□□ 0.09
VMP1Q96GC9 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 AL691403.2-201ENST00000618460 490 ntBASIC15.59■□□□□ 0.09
VMP1Q96GC9 AC055717.3-201ENST00000622967 595 ntBASIC15.59■□□□□ 0.09
VMP1Q96GC9 AC092902.6-201ENST00000641783 218 ntBASIC15.59■□□□□ 0.09
VMP1Q96GC9 AC079781.4-201ENST00000641908 219 ntBASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms