Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
USP39Q53GS9 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
USP39Q53GS9 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.48■□□□□ 0.23
USP39Q53GS9 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.48■□□□□ 0.23
USP39Q53GS9 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.48■□□□□ 0.23
USP39Q53GS9 RN7SL618P-201ENST00000477850 296 ntBASIC16.48■□□□□ 0.23
USP39Q53GS9 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.48■□□□□ 0.23
USP39Q53GS9 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.48■□□□□ 0.23
USP39Q53GS9 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.48■□□□□ 0.23
USP39Q53GS9 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
USP39Q53GS9 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
USP39Q53GS9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.48■□□□□ 0.23
USP39Q53GS9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP39Q53GS9 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
USP39Q53GS9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.47■□□□□ 0.23
USP39Q53GS9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
USP39Q53GS9 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.47■□□□□ 0.23
USP39Q53GS9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
USP39Q53GS9 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
USP39Q53GS9 DGCR5-201ENST00000399539 862 ntBASIC16.47■□□□□ 0.23
USP39Q53GS9 GNAQP1-201ENST00000444815 1067 ntBASIC16.47■□□□□ 0.23
USP39Q53GS9 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 INE1-201ENST00000456273 945 ntBASIC16.47■□□□□ 0.23
USP39Q53GS9 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.47■□□□□ 0.23
USP39Q53GS9 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.47■□□□□ 0.23
USP39Q53GS9 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 ZNF890P-202ENST00000530367 1156 ntBASIC16.47■□□□□ 0.23
USP39Q53GS9 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
USP39Q53GS9 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.47■□□□□ 0.23
USP39Q53GS9 AC017083.2-201ENST00000608069 979 ntBASIC16.47■□□□□ 0.23
USP39Q53GS9 AL133215.2-201ENST00000609242 977 ntBASIC16.47■□□□□ 0.23
USP39Q53GS9 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
USP39Q53GS9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.47■□□□□ 0.23
USP39Q53GS9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.47■□□□□ 0.23
USP39Q53GS9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.47■□□□□ 0.23
USP39Q53GS9 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
USP39Q53GS9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.47■□□□□ 0.23
USP39Q53GS9 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP39Q53GS9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.46■□□□□ 0.23
USP39Q53GS9 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.46■□□□□ 0.23
USP39Q53GS9 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 AL512384.1-201ENST00000406683 331 ntBASIC16.46■□□□□ 0.23
USP39Q53GS9 AL080243.2-201ENST00000418783 582 ntBASIC16.46■□□□□ 0.23
USP39Q53GS9 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.23
USP39Q53GS9 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.46■□□□□ 0.23
USP39Q53GS9 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.46■□□□□ 0.23
USP39Q53GS9 AC093004.1-201ENST00000508850 424 ntBASIC16.46■□□□□ 0.23
USP39Q53GS9 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 AC104794.3-201ENST00000566840 1248 ntBASIC16.46■□□□□ 0.23
USP39Q53GS9 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.46■□□□□ 0.23
USP39Q53GS9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
USP39Q53GS9 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
USP39Q53GS9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms