Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TFF3Q07654 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.23□□□□□ -0.13
TFF3Q07654 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.23□□□□□ -0.13
TFF3Q07654 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.23□□□□□ -0.13
TFF3Q07654 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 MYCLP2-201ENST00000449268 967 ntBASIC14.23□□□□□ -0.13
TFF3Q07654 AC022210.1-201ENST00000449856 793 ntBASIC14.23□□□□□ -0.13
TFF3Q07654 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.23□□□□□ -0.13
TFF3Q07654 AL589987.1-201ENST00000453380 819 ntBASIC14.23□□□□□ -0.13
TFF3Q07654 ELK1P1-201ENST00000485699 580 ntBASIC14.23□□□□□ -0.13
TFF3Q07654 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 CTBP2P3-201ENST00000585629 1255 ntBASIC14.23□□□□□ -0.13
TFF3Q07654 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 AL512652.2-201ENST00000625156 1716 ntBASIC14.23□□□□□ -0.13
TFF3Q07654 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
TFF3Q07654 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
TFF3Q07654 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.23□□□□□ -0.13
TFF3Q07654 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TFF3Q07654 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.22□□□□□ -0.13
TFF3Q07654 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.22□□□□□ -0.13
TFF3Q07654 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.22□□□□□ -0.13
TFF3Q07654 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
TFF3Q07654 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.22□□□□□ -0.13
TFF3Q07654 MIR658-201ENST00000385210 100 ntBASIC14.22□□□□□ -0.13
TFF3Q07654 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.22□□□□□ -0.13
TFF3Q07654 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.22□□□□□ -0.13
TFF3Q07654 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.22□□□□□ -0.13
TFF3Q07654 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.22□□□□□ -0.13
TFF3Q07654 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 AL109936.8-201ENST00000641772 604 ntBASIC14.22□□□□□ -0.13
TFF3Q07654 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.22□□□□□ -0.13
TFF3Q07654 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
TFF3Q07654 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TFF3Q07654 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms