Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A4P53420 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.04■□□□□ 0.32
COL4A4P53420 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A4P53420 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A4P53420 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 RETN-203ENST00000629642 400 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 REXO1L8P-201ENST00000604378 1897 ntBASIC17.04■□□□□ 0.32
COL4A4P53420 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 FXNP2-201ENST00000411625 547 ntBASIC17.04■□□□□ 0.32
COL4A4P53420 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A4P53420 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A4P53420 FAM86LP-201ENST00000478302 853 ntBASIC17.04■□□□□ 0.32
COL4A4P53420 AP001889.1-201ENST00000525414 633 ntBASIC17.04■□□□□ 0.32
COL4A4P53420 TIMM17BP1-201ENST00000545713 516 ntBASIC17.04■□□□□ 0.32
COL4A4P53420 AC105129.2-201ENST00000559536 390 ntBASIC17.04■□□□□ 0.32
COL4A4P53420 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A4P53420 MIR4321-201ENST00000592276 80 ntBASIC17.04■□□□□ 0.32
COL4A4P53420 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A4P53420 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
COL4A4P53420 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL4A4P53420 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.03■□□□□ 0.32
COL4A4P53420 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.03■□□□□ 0.32
COL4A4P53420 AC079316.1-201ENST00000548397 411 ntBASIC17.03■□□□□ 0.32
COL4A4P53420 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.03■□□□□ 0.32
COL4A4P53420 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.03■□□□□ 0.32
COL4A4P53420 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.03■□□□□ 0.32
COL4A4P53420 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A4P53420 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.03■□□□□ 0.32
COL4A4P53420 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.03■□□□□ 0.32
COL4A4P53420 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.03■□□□□ 0.32
COL4A4P53420 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.03■□□□□ 0.32
COL4A4P53420 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A4P53420 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
COL4A4P53420 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
COL4A4P53420 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.02■□□□□ 0.32
COL4A4P53420 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.02■□□□□ 0.32
COL4A4P53420 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms