Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 VN2R19P-201ENST00000442399 1052 ntBASIC13.34□□□□□ -0.27
CDX1P47902 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.34□□□□□ -0.27
CDX1P47902 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.34□□□□□ -0.27
CDX1P47902 PGAM5P1-201ENST00000518923 814 ntBASIC13.34□□□□□ -0.27
CDX1P47902 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.34□□□□□ -0.27
CDX1P47902 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.34□□□□□ -0.27
CDX1P47902 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.34□□□□□ -0.27
CDX1P47902 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.34□□□□□ -0.27
CDX1P47902 MIR4751-201ENST00000578027 74 ntBASIC13.34□□□□□ -0.27
CDX1P47902 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.34□□□□□ -0.27
CDX1P47902 AC064836.3-201ENST00000607928 673 ntBASIC13.34□□□□□ -0.27
CDX1P47902 AC010654.1-201ENST00000615722 808 ntBASIC13.34□□□□□ -0.27
CDX1P47902 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.34□□□□□ -0.27
CDX1P47902 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CDX1P47902 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.34□□□□□ -0.27
CDX1P47902 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
CDX1P47902 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.33□□□□□ -0.27
CDX1P47902 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.33□□□□□ -0.27
CDX1P47902 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.27
CDX1P47902 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.33□□□□□ -0.27
CDX1P47902 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
CDX1P47902 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.33□□□□□ -0.27
CDX1P47902 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
CDX1P47902 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
CDX1P47902 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CDX1P47902 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.33□□□□□ -0.28
CDX1P47902 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
CDX1P47902 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.33□□□□□ -0.28
CDX1P47902 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
CDX1P47902 AC007967.2-201ENST00000432613 625 ntBASIC13.33□□□□□ -0.28
CDX1P47902 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.33□□□□□ -0.28
CDX1P47902 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.33□□□□□ -0.28
CDX1P47902 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.33□□□□□ -0.28
CDX1P47902 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.33□□□□□ -0.28
CDX1P47902 AC004790.2-201ENST00000623588 572 ntBASIC13.33□□□□□ -0.28
CDX1P47902 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.33□□□□□ -0.28
CDX1P47902 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.33□□□□□ -0.28
CDX1P47902 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
CDX1P47902 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.33□□□□□ -0.28
CDX1P47902 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CDX1P47902 AC139749.1-202ENST00000617529 3139 ntBASIC13.33□□□□□ -0.28
CDX1P47902 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CDX1P47902 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CDX1P47902 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CDX1P47902 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CDX1P47902 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms