Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SCN4AP35499 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN4AP35499 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.76■□□□□ 0.59
SCN4AP35499 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.76■□□□□ 0.59
SCN4AP35499 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.76■□□□□ 0.59
SCN4AP35499 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SCN4AP35499 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN4AP35499 AL592424.1-201ENST00000563624 1536 ntBASIC18.76■□□□□ 0.59
SCN4AP35499 AC008132.1-202ENST00000342005 1389 ntBASIC18.76■□□□□ 0.59
SCN4AP35499 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 AC026471.1-201ENST00000564629 3026 ntBASIC18.76■□□□□ 0.59
SCN4AP35499 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN4AP35499 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.76■□□□□ 0.59
SCN4AP35499 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN4AP35499 CD8B2-202ENST00000417670 633 ntBASIC18.76■□□□□ 0.59
SCN4AP35499 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC18.76■□□□□ 0.59
SCN4AP35499 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 AC005730.2-201ENST00000564549 1184 ntBASIC18.76■□□□□ 0.59
SCN4AP35499 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SCN4AP35499 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SCN4AP35499 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SCN4AP35499 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SCN4AP35499 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.75■□□□□ 0.59
SCN4AP35499 AC020916.1-201ENST00000587762 1774 ntBASIC18.75■□□□□ 0.59
SCN4AP35499 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.75■□□□□ 0.59
SCN4AP35499 ATP6V0CP2-201ENST00000469409 207 ntBASIC18.75■□□□□ 0.59
SCN4AP35499 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.75■□□□□ 0.59
SCN4AP35499 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.75■□□□□ 0.59
SCN4AP35499 AL353726.2-201ENST00000623259 884 ntBASIC18.75■□□□□ 0.59
SCN4AP35499 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.75■□□□□ 0.59
SCN4AP35499 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.75■□□□□ 0.59
SCN4AP35499 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SCN4AP35499 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.75■□□□□ 0.59
SCN4AP35499 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SCN4AP35499 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SCN4AP35499 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.74■□□□□ 0.59
SCN4AP35499 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.74■□□□□ 0.59
SCN4AP35499 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.74■□□□□ 0.59
SCN4AP35499 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 AC104784.1-201ENST00000473096 294 ntBASIC18.74■□□□□ 0.59
SCN4AP35499 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.74■□□□□ 0.59
SCN4AP35499 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.74■□□□□ 0.59
SCN4AP35499 AL450472.2-201ENST00000603663 1156 ntBASIC18.74■□□□□ 0.59
SCN4AP35499 AL645939.5-201ENST00000606834 243 ntBASIC18.74■□□□□ 0.59
SCN4AP35499 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.74■□□□□ 0.59
SCN4AP35499 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.74■□□□□ 0.59
SCN4AP35499 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.74■□□□□ 0.59
SCN4AP35499 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SCN4AP35499 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC18.74■□□□□ 0.59
SCN4AP35499 MPV17-205ENST00000402310 906 ntTSL 5 BASIC18.74■□□□□ 0.59
SCN4AP35499 AL354877.1-201ENST00000424412 413 ntBASIC18.74■□□□□ 0.59
SCN4AP35499 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC18.74■□□□□ 0.59
SCN4AP35499 RN7SL555P-201ENST00000584742 339 ntBASIC18.74■□□□□ 0.59
SCN4AP35499 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.74■□□□□ 0.59
SCN4AP35499 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SCN4AP35499 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SCN4AP35499 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SCN4AP35499 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.73■□□□□ 0.59
SCN4AP35499 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SCN4AP35499 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SCN4AP35499 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms