Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGA1P17096 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.68■□□□□ 0.26
HMGA1P17096 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.68■□□□□ 0.26
HMGA1P17096 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HMGA1P17096 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.68■□□□□ 0.26
HMGA1P17096 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.68■□□□□ 0.26
HMGA1P17096 AC132938.2-201ENST00000579188 680 ntBASIC16.68■□□□□ 0.26
HMGA1P17096 AL591163.1-201ENST00000641757 987 ntBASIC16.68■□□□□ 0.26
HMGA1P17096 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGA1P17096 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.68■□□□□ 0.26
HMGA1P17096 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.68■□□□□ 0.26
HMGA1P17096 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.68■□□□□ 0.26
HMGA1P17096 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGA1P17096 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGA1P17096 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HMGA1P17096 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGA1P17096 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
HMGA1P17096 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.67■□□□□ 0.26
HMGA1P17096 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HMGA1P17096 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 AL512384.1-201ENST00000406683 331 ntBASIC16.67■□□□□ 0.26
HMGA1P17096 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGA1P17096 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGA1P17096 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGA1P17096 PHKG1P2-201ENST00000457537 863 ntBASIC16.67■□□□□ 0.26
HMGA1P17096 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 GIMAP3P-201ENST00000495150 836 ntBASIC16.67■□□□□ 0.26
HMGA1P17096 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGA1P17096 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGA1P17096 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HMGA1P17096 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.67■□□□□ 0.26
HMGA1P17096 TMEM261P1-201ENST00000604899 340 ntBASIC16.67■□□□□ 0.26
HMGA1P17096 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 REXO1L1P-202ENST00000608646 1974 ntBASIC16.67■□□□□ 0.26
HMGA1P17096 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGA1P17096 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGA1P17096 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
HMGA1P17096 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HMGA1P17096 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 OR8S1-201ENST00000310194 1080 ntBASIC16.66■□□□□ 0.26
HMGA1P17096 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGA1P17096 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGA1P17096 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGA1P17096 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HMGA1P17096 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGA1P17096 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGA1P17096 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGA1P17096 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 AL158212.4-201ENST00000624062 1286 ntBASIC16.66■□□□□ 0.26
HMGA1P17096 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HMGA1P17096 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGA1P17096 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGA1P17096 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGA1P17096 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGA1P17096 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms