Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.78■□□□□ 0.12
TNFP01375 TP53TG3HP-202ENST00000569755 579 ntBASIC15.78■□□□□ 0.12
TNFP01375 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.78■□□□□ 0.12
TNFP01375 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.78■□□□□ 0.12
TNFP01375 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 FLJ38576-201ENST00000623820 2459 ntBASIC15.78■□□□□ 0.12
TNFP01375 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.78■□□□□ 0.12
TNFP01375 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 ME2P1-201ENST00000426028 1970 ntBASIC15.78■□□□□ 0.12
TNFP01375 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.78■□□□□ 0.12
TNFP01375 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.77■□□□□ 0.12
TNFP01375 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.77■□□□□ 0.12
TNFP01375 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.77■□□□□ 0.12
TNFP01375 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.77■□□□□ 0.12
TNFP01375 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.77■□□□□ 0.12
TNFP01375 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TNFP01375 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.77■□□□□ 0.12
TNFP01375 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.77■□□□□ 0.12
TNFP01375 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.77■□□□□ 0.12
TNFP01375 RN7SL692P-201ENST00000464677 288 ntBASIC15.77■□□□□ 0.12
TNFP01375 AC093004.1-201ENST00000508850 424 ntBASIC15.77■□□□□ 0.12
TNFP01375 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 API5-211ENST00000534695 560 ntTSL 5 BASIC15.77■□□□□ 0.12
TNFP01375 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 SRD5A3P1-201ENST00000603021 949 ntBASIC15.77■□□□□ 0.12
TNFP01375 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.77■□□□□ 0.12
TNFP01375 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.77■□□□□ 0.11
TNFP01375 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TNFP01375 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TNFP01375 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.77■□□□□ 0.11
TNFP01375 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.77■□□□□ 0.11
TNFP01375 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TNFP01375 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.77■□□□□ 0.11
TNFP01375 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TNFP01375 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TNFP01375 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
TNFP01375 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TNFP01375 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TNFP01375 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.76■□□□□ 0.11
TNFP01375 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.76■□□□□ 0.11
TNFP01375 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.76■□□□□ 0.11
TNFP01375 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.76■□□□□ 0.11
TNFP01375 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.76■□□□□ 0.11
TNFP01375 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.76■□□□□ 0.11
TNFP01375 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 TIMM17BP1-201ENST00000545713 516 ntBASIC15.76■□□□□ 0.11
TNFP01375 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.76■□□□□ 0.11
TNFP01375 AL596325.1-201ENST00000563991 1082 ntBASIC15.76■□□□□ 0.11
TNFP01375 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 AC140912.1-201ENST00000577171 1054 ntBASIC15.76■□□□□ 0.11
TNFP01375 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.76■□□□□ 0.11
TNFP01375 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.76■□□□□ 0.11
TNFP01375 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TNFP01375 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms