Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX2Q9NPC8 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 MKNK2P1-201ENST00000437526 628 ntBASIC17.37■□□□□ 0.37
SIX2Q9NPC8 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 AC092850.2-201ENST00000623821 2697 ntBASIC17.37■□□□□ 0.37
SIX2Q9NPC8 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.37■□□□□ 0.37
SIX2Q9NPC8 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SIX2Q9NPC8 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 AL136982.4-201ENST00000437689 1740 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 PPT1-215ENST00000641471 2368 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 AC018892.3-201ENST00000623986 2499 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 ACTG1P14-201ENST00000446382 1122 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 TIMM8BP1-201ENST00000452384 211 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 AC024267.1-201ENST00000582320 895 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 MTDHP5-201ENST00000598980 586 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 CICP13-201ENST00000422015 2789 ntBASIC17.36■□□□□ 0.37
SIX2Q9NPC8 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.36■□□□□ 0.37
SIX2Q9NPC8 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms