Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 AL589987.1-201ENST00000453380 819 ntBASIC15.76■□□□□ 0.11
LMX1AQ8TE12 POU5F1P6-201ENST00000466990 990 ntBASIC15.76■□□□□ 0.11
LMX1AQ8TE12 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 WASH4P-201ENST00000564273 1246 ntBASIC15.76■□□□□ 0.11
LMX1AQ8TE12 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 INE1-201ENST00000456273 945 ntBASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 MEIS3P1-201ENST00000495167 958 ntBASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 TIMM17BP1-201ENST00000545713 516 ntBASIC15.75■□□□□ 0.11
LMX1AQ8TE12 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC023310.3-201ENST00000557027 670 ntBASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC100756.1-201ENST00000562736 682 ntBASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC138749.3-201ENST00000567691 622 ntBASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AC116165.1-201ENST00000611806 668 ntBASIC15.75■□□□□ 0.11
LMX1AQ8TE12 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LMX1AQ8TE12 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1AQ8TE12 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms