Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 UXT-AS1-201ENST00000590504 1525 ntBASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AL589702.1-201ENST00000641229 1509 ntBASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AC098859.1-201ENST00000502915 1238 ntBASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 AL365330.1-201ENST00000607459 531 ntBASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE3Q6ZMZ3 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SYNE3Q6ZMZ3 AC068587.6-202ENST00000641839 5619 ntBASIC19.14■□□□□ 0.66
SYNE3Q6ZMZ3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SYNE3Q6ZMZ3 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SYNE3Q6ZMZ3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SYNE3Q6ZMZ3 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 AC005237.2-201ENST00000434368 219 ntBASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SYNE3Q6ZMZ3 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.13■□□□□ 0.65
SYNE3Q6ZMZ3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNE3Q6ZMZ3 AL596087.1-201ENST00000400979 1969 ntBASIC19.13■□□□□ 0.65
SYNE3Q6ZMZ3 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNE3Q6ZMZ3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE3Q6ZMZ3 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNE3Q6ZMZ3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms