Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTCHD3Q3KNS1 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 TFAMP1-201ENST00000412727 736 ntBASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 AC005237.2-201ENST00000434368 219 ntBASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 AC023141.5-201ENST00000458585 616 ntBASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 FAM86C2P-203ENST00000528684 1004 ntBASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 AL135744.1-201ENST00000565098 629 ntBASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.91■□□□□ 0.14
PTCHD3Q3KNS1 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 AC079140.1-201ENST00000508039 487 ntBASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 AC093520.2-201ENST00000561830 333 ntBASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 RARRES2P8-201ENST00000566335 367 ntBASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 AC024909.3-201ENST00000611513 2257 ntBASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD3Q3KNS1 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms