Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AC013268.4-201ENST00000637413 2228 ntBASIC15.21■□□□□ 0.03
CDH12P55289 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH12P55289 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH12P55289 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.21■□□□□ 0.02
CDH12P55289 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH12P55289 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
CDH12P55289 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.21■□□□□ 0.02
CDH12P55289 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 RPS2P28-201ENST00000314255 741 ntBASIC15.2■□□□□ 0.02
CDH12P55289 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.2■□□□□ 0.02
CDH12P55289 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 HCG4-201ENST00000418983 998 ntBASIC15.2■□□□□ 0.02
CDH12P55289 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.2■□□□□ 0.02
CDH12P55289 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.2■□□□□ 0.02
CDH12P55289 AL691432.3-201ENST00000621860 400 ntBASIC15.2■□□□□ 0.02
CDH12P55289 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 AC092850.2-201ENST00000623821 2697 ntBASIC15.2■□□□□ 0.02
CDH12P55289 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDH12P55289 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 AC022532.1-201ENST00000624563 1728 ntBASIC15.2■□□□□ 0.02
CDH12P55289 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH12P55289 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH12P55289 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CDH12P55289 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH12P55289 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH12P55289 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH12P55289 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CDH12P55289 MRPL20P1-201ENST00000400819 433 ntBASIC15.19■□□□□ 0.02
CDH12P55289 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH12P55289 AC079781.3-201ENST00000449110 356 ntBASIC15.19■□□□□ 0.02
CDH12P55289 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH12P55289 AC108073.2-201ENST00000464002 357 ntBASIC15.19■□□□□ 0.02
CDH12P55289 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH12P55289 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH12P55289 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH12P55289 OR7E47P-204ENST00000575924 449 ntBASIC15.19■□□□□ 0.02
CDH12P55289 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 AC004790.2-201ENST00000623588 572 ntBASIC15.19■□□□□ 0.02
CDH12P55289 FAM215A-202ENST00000632077 792 ntBASIC15.19■□□□□ 0.02
CDH12P55289 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH12P55289 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CDH12P55289 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CDH12P55289 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH12P55289 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH12P55289 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms