Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 KRT8P35-201ENST00000483942 1338 ntBASIC19.3■□□□□ 0.68
BRCA1P38398 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.3■□□□□ 0.68
BRCA1P38398 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.3■□□□□ 0.68
BRCA1P38398 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.3■□□□□ 0.68
BRCA1P38398 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
BRCA1P38398 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.3■□□□□ 0.68
BRCA1P38398 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.3■□□□□ 0.68
BRCA1P38398 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
BRCA1P38398 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC19.3■□□□□ 0.68
BRCA1P38398 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC19.3■□□□□ 0.68
BRCA1P38398 AC069218.1-201ENST00000435269 762 ntBASIC19.3■□□□□ 0.68
BRCA1P38398 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.3■□□□□ 0.68
BRCA1P38398 RN7SL181P-201ENST00000462921 277 ntBASIC19.3■□□□□ 0.68
BRCA1P38398 RN7SL11P-201ENST00000471305 293 ntBASIC19.3■□□□□ 0.68
BRCA1P38398 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.3■□□□□ 0.68
BRCA1P38398 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC19.3■□□□□ 0.68
BRCA1P38398 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
BRCA1P38398 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRCA1P38398 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
BRCA1P38398 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.29■□□□□ 0.68
BRCA1P38398 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.29■□□□□ 0.68
BRCA1P38398 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.29■□□□□ 0.68
BRCA1P38398 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.29■□□□□ 0.68
BRCA1P38398 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC19.29■□□□□ 0.68
BRCA1P38398 AL450472.2-201ENST00000603663 1156 ntBASIC19.29■□□□□ 0.68
BRCA1P38398 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.29■□□□□ 0.68
BRCA1P38398 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.29■□□□□ 0.68
BRCA1P38398 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.29■□□□□ 0.68
BRCA1P38398 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRCA1P38398 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
BRCA1P38398 SMS-201ENST00000379404 1174 ntTSL 3 BASIC19.28■□□□□ 0.68
BRCA1P38398 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC19.28■□□□□ 0.68
BRCA1P38398 GAPDHP40-201ENST00000505218 1006 ntBASIC19.28■□□□□ 0.68
BRCA1P38398 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC19.28■□□□□ 0.68
BRCA1P38398 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
BRCA1P38398 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
BRCA1P38398 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
BRCA1P38398 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.28■□□□□ 0.68
BRCA1P38398 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 ACTG1P2-201ENST00000415776 1125 ntBASIC19.28■□□□□ 0.68
BRCA1P38398 ACTG1P11-201ENST00000425411 1125 ntBASIC19.28■□□□□ 0.68
BRCA1P38398 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 AC132938.4-201ENST00000623835 848 ntBASIC19.28■□□□□ 0.68
BRCA1P38398 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.28■□□□□ 0.68
BRCA1P38398 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRCA1P38398 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.28■□□□□ 0.68
BRCA1P38398 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
BRCA1P38398 PCDHB18P-201ENST00000524813 2368 ntBASIC19.27■□□□□ 0.68
BRCA1P38398 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.27■□□□□ 0.68
BRCA1P38398 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.27■□□□□ 0.68
BRCA1P38398 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC19.27■□□□□ 0.68
BRCA1P38398 RNA5SP486-201ENST00000515961 83 ntBASIC19.27■□□□□ 0.68
BRCA1P38398 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC19.27■□□□□ 0.68
BRCA1P38398 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC19.27■□□□□ 0.68
BRCA1P38398 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 LINC01144-201ENST00000626198 1710 ntBASIC19.27■□□□□ 0.68
BRCA1P38398 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRCA1P38398 AC009053.2-201ENST00000563701 2365 ntBASIC19.27■□□□□ 0.67
BRCA1P38398 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms