Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 AC116353.5-201ENST00000638148 1699 ntBASIC20.81■□□□□ 0.92
RXRBP28702 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 PLS3-210ENST00000626746 216 ntTSL 4 BASIC20.81■□□□□ 0.92
RXRBP28702 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.81■□□□□ 0.92
RXRBP28702 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.81■□□□□ 0.92
RXRBP28702 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RXRBP28702 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.8■□□□□ 0.92
RXRBP28702 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC20.8■□□□□ 0.92
RXRBP28702 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.8■□□□□ 0.92
RXRBP28702 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.8■□□□□ 0.92
RXRBP28702 ALG1L13P-202ENST00000519320 584 ntBASIC20.8■□□□□ 0.92
RXRBP28702 RTN3P1-201ENST00000536295 711 ntBASIC20.8■□□□□ 0.92
RXRBP28702 AC103988.2-201ENST00000561804 725 ntBASIC20.8■□□□□ 0.92
RXRBP28702 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC20.8■□□□□ 0.92
RXRBP28702 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.8■□□□□ 0.92
RXRBP28702 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.8■□□□□ 0.92
RXRBP28702 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RXRBP28702 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC20.79■□□□□ 0.92
RXRBP28702 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RXRBP28702 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
RXRBP28702 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RXRBP28702 SLC16A6P1-201ENST00000413214 1059 ntBASIC20.79■□□□□ 0.92
RXRBP28702 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC20.79■□□□□ 0.92
RXRBP28702 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC20.79■□□□□ 0.92
RXRBP28702 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RXRBP28702 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
RXRBP28702 AC013355.1-201ENST00000562625 723 ntBASIC20.79■□□□□ 0.92
RXRBP28702 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC20.79■□□□□ 0.92
RXRBP28702 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC20.79■□□□□ 0.92
RXRBP28702 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC20.79■□□□□ 0.92
RXRBP28702 MIR6842-201ENST00000612539 65 ntBASIC20.79■□□□□ 0.92
RXRBP28702 AC022748.3-201ENST00000621828 275 ntBASIC20.79■□□□□ 0.92
RXRBP28702 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.79■□□□□ 0.92
RXRBP28702 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RXRBP28702 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.79■□□□□ 0.92
RXRBP28702 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.78■□□□□ 0.92
RXRBP28702 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RXRBP28702 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.78■□□□□ 0.92
RXRBP28702 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RXRBP28702 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
RXRBP28702 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.78■□□□□ 0.92
RXRBP28702 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.78■□□□□ 0.92
RXRBP28702 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RXRBP28702 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms